Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | mitochondrion | 64.2 | 72.73 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 62.96 | 62.2 |
| KRH22888 | Soybean | cytosol, mitochondrion, nucleus | 45.68 | 48.05 |
| Solyc06g075170.1.1 | Tomato | nucleus | 47.53 | 47.24 |
| KRH26408 | Soybean | cytosol | 40.74 | 44.3 |
| PGSC0003DMT400062500 | Potato | nucleus | 46.3 | 43.86 |
| PGSC0003DMT400045373 | Potato | cytosol | 38.27 | 42.18 |
| VIT_06s0004g02830.t01 | Wine grape | cytosol | 43.21 | 41.92 |
| VIT_08s0040g01860.t01 | Wine grape | cytosol | 41.98 | 41.46 |
| Bra020237.1-P | Field mustard | nucleus | 41.98 | 40.96 |
| AT5G60680.1 | Thale cress | nucleus | 40.74 | 40.49 |
| Bra002459.1-P | Field mustard | nucleus | 39.51 | 40.0 |
| PGSC0003DMT400020798 | Potato | plastid | 41.98 | 40.0 |
| CDY65979 | Canola | nucleus | 38.89 | 39.62 |
| PGSC0003DMT400055482 | Potato | cytosol | 38.89 | 39.38 |
| Solyc11g069450.1.1 | Tomato | cytosol | 41.98 | 39.31 |
| Solyc09g007790.1.1 | Tomato | cytosol | 38.27 | 39.24 |
| Bra009543.1-P | Field mustard | nucleus | 42.59 | 39.2 |
| AT3G45210.1 | Thale cress | nucleus | 35.8 | 39.19 |
| AT5G03230.1 | Thale cress | nucleus | 40.12 | 39.16 |
| CDX70321 | Canola | nucleus | 41.98 | 38.64 |
| CDY10396 | Canola | nucleus | 41.98 | 38.64 |
| KRH29916 | Soybean | mitochondrion | 40.74 | 38.6 |
| Zm00001d014007_P001 | Maize | cytosol, plastid | 42.59 | 38.55 |
| HORVU1Hr1G041890.1 | Barley | mitochondrion | 42.59 | 38.55 |
| KRH25013 | Soybean | mitochondrion | 40.12 | 38.24 |
| TraesCS1D01G155400.1 | Wheat | mitochondrion | 42.59 | 38.12 |
| TraesCS1B01G174100.1 | Wheat | mitochondrion | 42.59 | 38.12 |
| TraesCS1A01G157900.1 | Wheat | mitochondrion | 42.59 | 38.12 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 31.48 | 37.78 |
| Solyc10g086110.1.1 | Tomato | cytosol | 36.42 | 37.34 |
| EER91475 | Sorghum | mitochondrion | 43.21 | 36.84 |
| Bra005738.1-P | Field mustard | cytosol | 39.51 | 35.96 |
| CDY11244 | Canola | cytosol | 38.89 | 35.39 |
| GSMUA_Achr11P... | Banana | cytosol | 24.07 | 35.14 |
| KRG95986 | Soybean | nucleus | 32.72 | 34.87 |
| GSMUA_AchrUn_... | Banana | cytosol | 14.81 | 34.78 |
| CDX80857 | Canola | cytosol | 38.27 | 34.64 |
| KRH19865 | Soybean | mitochondrion | 38.27 | 34.44 |
| CDY62461 | Canola | nucleus | 32.72 | 33.54 |
| CDX77180 | Canola | nucleus | 33.95 | 33.33 |
| KRH67690 | Soybean | cytosol | 33.95 | 33.13 |
| GSMUA_Achr7P00240_001 | Banana | extracellular | 17.28 | 32.56 |
| AT2G28400.1 | Thale cress | mitochondrion | 32.1 | 32.1 |
| KRH32477 | Soybean | cytosol | 37.04 | 31.91 |
| GSMUA_Achr6P06990_001 | Banana | mitochondrion, nucleus | 32.72 | 31.36 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.63 | 26.37 |
| GSMUA_Achr4P33500_001 | Banana | nucleus | 29.63 | 26.23 |
| GSMUA_Achr1P04050_001 | Banana | mitochondrion | 28.4 | 23.12 |
| GSMUA_Achr10P... | Banana | nucleus | 29.01 | 22.93 |
| GSMUA_Achr6P00350_001 | Banana | cytosol, nucleus, plastid | 24.07 | 22.81 |
| Bra035703.1-P | Field mustard | cytosol | 29.63 | 19.51 |
| Os10t0481000-00 | Rice | mitochondrion | 30.86 | 16.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P18920_001 | EnsemblPlants:GSMUA_Achr8T18920_001 | EnsemblPlantsGene:GSMUA_Achr8G18920_001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF40 |
| PFAM:PF04520 | SEG:seg | UniParc:UPI0002961CE9 | UniProt:M0TRP5 | MapMan:35.2 | : |
Description
Putative Glycoprotein C [Source:GMGC_GENE;Acc:GSMUA_Achr8G18920_001]
Coordinates
chr8:+:23824866..23825644
Molecular Weight (calculated)
17434.2 Da
IEP (calculated)
6.947
GRAVY (calculated)
-0.581
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGRQQLTA KHAAHRLFTP TAAGFDADEF EESDVWGSPI EPRLAEFPKP APSSRPSSAR CKKADRAVAD AAAAASLPVN IPDWSKILGS YYGGGSSNSA
101: RGWWEEEGEE GGAGGPMIPP HELLWRSRAA SFSVHEGVGC TLKGRDLRRV RNAIWEKTGF QD
101: RGWWEEEGEE GGAGGPMIPP HELLWRSRAA SFSVHEGVGC TLKGRDLRRV RNAIWEKTGF QD
001: MASRKLFFVK PKYIYPEPKP EMSDENVFEF DESDIHNLGD HQLPNSFDAK RSISISRLRR KPTKTGDSGN REITKTGSLP VNIPDWSKIL KSEYRGHAIP
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD
Arabidopsis Description
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 [Source:UniProtKB/TrEMBL;Acc:Q9LYW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.