Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 98.36 | 98.9 |
| GSMUA_Achr7P00240_001 | Banana | extracellular | 27.32 | 58.14 |
| VIT_10s0116g01810.t01 | Wine grape | mitochondrion, nucleus | 44.26 | 41.97 |
| KRH11426 | Soybean | mitochondrion | 42.62 | 40.41 |
| KRH20860 | Soybean | mitochondrion | 40.98 | 38.46 |
| TraesCS2D01G266500.1 | Wheat | mitochondrion, nucleus | 37.16 | 38.2 |
| CDX79110 | Canola | nucleus | 36.07 | 38.15 |
| VIT_10s0116g01820.t01 | Wine grape | mitochondrion, nucleus | 44.26 | 38.03 |
| GSMUA_Achr11P... | Banana | cytosol | 22.95 | 37.84 |
| AT1G11700.1 | Thale cress | nucleus | 41.53 | 37.81 |
| TraesCS2B01G286300.1 | Wheat | mitochondrion, nucleus | 37.16 | 37.78 |
| Bra013574.1-P | Field mustard | cytosol | 35.52 | 37.57 |
| TraesCS2A01G256200.1 | Wheat | mitochondrion, nucleus | 37.16 | 37.36 |
| CDX82885 | Canola | nucleus | 34.97 | 36.99 |
| HORVU2Hr1G064730.1 | Barley | cytosol | 35.52 | 36.93 |
| EER97815 | Sorghum | mitochondrion | 33.88 | 36.9 |
| KRH02073 | Soybean | nucleus | 42.62 | 36.62 |
| AT1G61930.1 | Thale cress | cytosol | 40.44 | 36.45 |
| CDY34631 | Canola | nucleus | 39.89 | 36.32 |
| TraesCS2A01G222500.1 | Wheat | cytosol | 33.33 | 36.09 |
| CDX97979 | Canola | mitochondrion | 39.89 | 35.78 |
| CDY49797 | Canola | mitochondrion | 39.89 | 35.61 |
| Bra019837.1-P | Field mustard | mitochondrion | 39.89 | 35.61 |
| TraesCS2D01G228500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 32.79 | 35.5 |
| TraesCS2B01G247900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 32.79 | 35.5 |
| KRH51082 | Soybean | nucleus | 44.81 | 35.5 |
| Solyc02g080510.1.1 | Tomato | mitochondrion | 39.89 | 35.44 |
| CDY19509 | Canola | cytosol | 38.25 | 35.35 |
| Bra027071.1-P | Field mustard | cytosol | 38.25 | 35.35 |
| EER99449 | Sorghum | mitochondrion | 37.16 | 35.05 |
| CDY12918 | Canola | cytosol | 37.7 | 34.85 |
| PGSC0003DMT400042431 | Potato | mitochondrion, nucleus | 39.34 | 34.78 |
| Zm00001d021627_P001 | Maize | mitochondrion | 35.52 | 34.57 |
| AT4G21930.1 | Thale cress | cytosol | 34.43 | 34.43 |
| Zm00001d006489_P001 | Maize | mitochondrion | 36.07 | 34.38 |
| PGSC0003DMT400032972 | Potato | mitochondrion | 36.61 | 33.67 |
| Os07t0516300-01 | Rice | mitochondrion | 35.52 | 33.16 |
| GSMUA_Achr11P... | Banana | mitochondrion | 25.68 | 32.87 |
| Solyc02g032800.1.1 | Tomato | nucleus | 38.25 | 32.56 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 23.5 | 31.85 |
| GSMUA_Achr6P00350_001 | Banana | cytosol, nucleus, plastid | 28.96 | 30.99 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 26.78 | 29.88 |
| GSMUA_Achr8P18920_001 | Banana | cytosol, mitochondrion | 26.23 | 29.63 |
| GSMUA_Achr6P06990_001 | Banana | mitochondrion, nucleus | 26.78 | 28.99 |
| GSMUA_AchrUn_... | Banana | cytosol | 10.93 | 28.99 |
| GSMUA_Achr10P... | Banana | nucleus | 28.96 | 25.85 |
| GSMUA_Achr1P04050_001 | Banana | mitochondrion | 25.14 | 23.12 |
| HORVU2Hr1G046550.2 | Barley | plastid | 25.14 | 22.22 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P33500_001 | EnsemblPlants:GSMUA_Achr4T33500_001 | EnsemblPlantsGene:GSMUA_Achr4G33500_001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF11 |
| PFAM:PF04520 | SEG:seg | UniParc:UPI0002948F07 | UniProt:M0SUB2 | MapMan:35.2 | : |
Description
Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G33500_001]
Coordinates
chr4:-:29902942..29903493
Molecular Weight (calculated)
19721.6 Da
IEP (calculated)
4.973
GRAVY (calculated)
-0.710
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKGRRHGAE RLLEAPAHSA GRSGAADLPN LAEDDIWAAF EGDNDEGGGQ DRRTSRARSR VWVDGHVGGL SLNFEDSYHG TAAVAARSLP LDRLRVAASA
101: PVNVPAWSRS LRSSSGVPPP EEEAEEEEEE ETGGEWLPPH EYLARVQGKT MGTSVLEGAG RTLKGRDMSR VRDAVWSQTG YFG
101: PVNVPAWSRS LRSSSGVPPP EEEAEEEEEE ETGGEWLPPH EYLARVQGKT MGTSVLEGAG RTLKGRDMSR VRDAVWSQTG YFG
001: MAKGRKPTTM NRSDRYLGSY TYGDSHGNSV TDELELGEED IWSPAVIHDD TTENEESYGT WNLRATLGKN GRVGGLSLAF EGSLVAPPSS SPMIVQKIHG
101: GGGEGEEDRR KLASSAPVNV PDWSKIYRVD SVESIHELDD EDDEDEESGM MPPHEYLAKS QARRSRKIGG GGASVFDGVG RTLKGRELRR VRDAIWSQTG
201: FYG
101: GGGEGEEDRR KLASSAPVNV PDWSKIYRVD SVESIHELDD EDDEDEESGM MPPHEYLAKS QARRSRKIGG GGASVFDGVG RTLKGRELRR VRDAIWSQTG
201: FYG
Arabidopsis Description
At1g61930 [Source:UniProtKB/TrEMBL;Acc:O80698]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.