Factsheet for Bra027071.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19509	Canola	cytosol	97.98	97.98
CDY12918	Canola	cytosol	97.47	97.47
AT1G61930.1	Thale cress	cytosol	81.31	79.31
Bra019837.1-P	Field mustard	mitochondrion	67.68	65.37
PGSC0003DMT400042431	Potato	mitochondrion, nucleus	47.47	45.41
PGSC0003DMT400032972	Potato	mitochondrion	44.44	44.22
Solyc02g032800.1.1	Tomato	nucleus	47.98	44.19
Solyc02g080510.1.1	Tomato	mitochondrion	45.96	44.17
Bra013574.1-P	Field mustard	cytosol	36.87	42.2
GSMUA_AchrUn_...	Banana	nucleus	35.35	38.46
GSMUA_Achr7P00240_001	Banana	extracellular	16.67	38.37
GSMUA_Achr4P33500_001	Banana	nucleus	35.35	38.25
TraesCS2D01G266500.1	Wheat	mitochondrion, nucleus	33.84	37.64
HORVU2Hr1G064730.1	Barley	cytosol	33.33	37.5
TraesCS2B01G286300.1	Wheat	mitochondrion, nucleus	33.84	37.22
TraesCS2A01G256200.1	Wheat	mitochondrion, nucleus	33.84	36.81
EER97815	Sorghum	mitochondrion	30.3	35.71
TraesCS2B01G247900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.79	33.73
TraesCS2A01G222500.1	Wheat	cytosol	28.28	33.14
TraesCS2D01G228500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	27.78	32.54
Bra029510.1-P	Field mustard	nucleus	24.24	32.21
Bra002459.1-P	Field mustard	nucleus	25.76	31.88
Bra020237.1-P	Field mustard	nucleus	25.76	30.72
Bra013577.1-P	Field mustard	nucleus	22.73	29.41
Bra019408.1-P	Field mustard	nucleus	23.23	29.3
Bra019080.1-P	Field mustard	nucleus	22.22	29.14
Zm00001d006489_P001	Maize	mitochondrion	27.78	28.65
Zm00001d021627_P001	Maize	mitochondrion	26.77	28.19
EER99449	Sorghum	mitochondrion	27.27	27.84
Os07t0516300-01	Rice	mitochondrion	27.27	27.55
Bra005738.1-P	Field mustard	cytosol	24.24	26.97
Bra009543.1-P	Field mustard	nucleus	23.23	26.14
GSMUA_Achr6P00350_001	Banana	cytosol, nucleus, plastid	21.72	25.15
Bra027283.1-P	Field mustard	nucleus	23.74	21.86
Bra021587.1-P	Field mustard	nucleus	24.24	21.82
HORVU2Hr1G046550.2	Barley	plastid	22.73	21.74
Bra001580.1-P	Field mustard	nucleus	23.74	20.89
Bra035703.1-P	Field mustard	cytosol	21.72	17.48

Protein Annotations

EnsemblPlants:Bra027071.1	EnsemblPlants:Bra027071.1-P	EnsemblPlantsGene:Bra027071	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF11
PFAM:PF04520	SEG:seg	UniParc:UPI00025425DA	UniProt:M4EE60	MapMan:35.2	:

Description

AT1G61930 (E=6e-083) | unknown protein

Coordinates

chrA09:-:8173665..8174261

Molecular Weight (calculated)

21549.9 Da

IEP (calculated)

5.326

GRAVY (calculated)

-0.719

Length

198 amino acids

Sequence
(BLAST)

001: MARGRNPTTM NRSDRYLGSY SYGDSHGTSL TDELELAEED IWSPAVIHDT ETEDSYGGWN SSANSVKSGR VGGLSLTFKS SSNAPSSSPM LVQQIHGGVG
101: EGGEIMRNLA SSAPVNVPDW SKIYRVNLVE STHELDGDDE EEPGMMPPHE YLAKSQARRS RKMGGGGASM FEGVGRTLKG RELRRVRDAI WSQTGFYG

Best Arabidopsis Sequence Match ( AT1G61930.1 )
(BLAST)

001: MAKGRKPTTM NRSDRYLGSY TYGDSHGNSV TDELELGEED IWSPAVIHDD TTENEESYGT WNLRATLGKN GRVGGLSLAF EGSLVAPPSS SPMIVQKIHG
101: GGGEGEEDRR KLASSAPVNV PDWSKIYRVD SVESIHELDD EDDEDEESGM MPPHEYLAKS QARRSRKIGG GGASVFDGVG RTLKGRELRR VRDAIWSQTG
201: FYG

Arabidopsis Description

At1g61930 [Source:UniProtKB/TrEMBL;Acc:O80698]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.