Factsheet for Bra027283.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97628	Canola	nucleus	99.07	98.61
CDY68595	Canola	nucleus	96.28	95.83
Bra001580.1-P	Field mustard	nucleus	85.12	81.33
Bra021587.1-P	Field mustard	nucleus	80.93	79.09
VIT_06s0080g00750.t01	Wine grape	cytosol	18.14	78.0
KRH26654	Soybean	cytosol	45.58	40.5
PGSC0003DMT400015061	Potato	cytosol, mitochondrion, nucleus, plastid	39.53	38.29
KRH30402	Soybean	nucleus	41.4	38.2
GSMUA_Achr6P06990_001	Banana	mitochondrion, nucleus	29.3	37.28
KRH22667	Soybean	nucleus	41.86	36.59
KRH25262	Soybean	nucleus	39.53	35.12
Bra029510.1-P	Field mustard	nucleus	23.26	33.56
TraesCS2A01G295700.1	Wheat	nucleus	35.35	32.2
TraesCS2B01G312200.1	Wheat	nucleus	35.35	32.2
TraesCS2D01G293600.1	Wheat	nucleus	35.81	32.08
EER94255	Sorghum	mitochondrion, nucleus	35.81	31.95
Bra019408.1-P	Field mustard	nucleus	23.26	31.85
Bra020237.1-P	Field mustard	nucleus	24.19	31.33
Bra013577.1-P	Field mustard	nucleus	21.86	30.72
Os04t0413900-01	Rice	nucleus	34.88	30.61
Zm00001d003775_P001	Maize	cytosol, mitochondrion, nucleus	34.88	30.24
OQU81531	Sorghum	nucleus	34.88	29.76
Zm00001d032976_P001	Maize	mitochondrion, nucleus	34.88	29.64
Bra002459.1-P	Field mustard	nucleus	21.86	29.38
Bra019080.1-P	Field mustard	nucleus	20.0	28.48
Bra013574.1-P	Field mustard	cytosol	22.79	28.32
Bra009543.1-P	Field mustard	nucleus	22.79	27.84
Bra005738.1-P	Field mustard	cytosol	21.86	26.4
Bra019837.1-P	Field mustard	mitochondrion	24.19	25.37
Bra027071.1-P	Field mustard	cytosol	21.86	23.74
Solyc06g074260.2.1	Tomato	cytosol	37.67	20.98
Bra035703.1-P	Field mustard	cytosol	22.33	19.51

Protein Annotations

EnsemblPlants:Bra027283.1	EnsemblPlants:Bra027283.1-P	EnsemblPlantsGene:Bra027283	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF42
PFAM:PF04520	SEG:seg	UniParc:UPI0002547B25	UniProt:M4EES1	MapMan:35.2	:

Description

AT3G15040 (E=5e-038) | unknown protein

Coordinates

chrA05:+:20103403..20104050

Molecular Weight (calculated)

23051.8 Da

IEP (calculated)

6.902

GRAVY (calculated)

-0.597

Length

215 amino acids

Sequence
(BLAST)

001: MNKSPRIDIP SSSSPASASS ADGEFNEDDI FSIDVTHTPP SSSPSQHPPA RQLQRSKSGL KNVEASGILA ALPEPSGNSY LNHVFHHKPA ASSSPSSSSA
101: RTIPSAPKPP QERLPYTASF IGGGKFPQSA PVQVPLASSA MMNRHKKEFK LTDVVDEDEE EEEGEMLPPH EIVARSLAQS SLLSSSVLEG AGRTLKGRDL
201: RQVRNAVFRR TGFID

Best Arabidopsis Sequence Match ( AT3G15040.1 )
(BLAST)

001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID

Arabidopsis Description

At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.