Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G293600.1 | Wheat | nucleus | 98.73 | 97.08 |
| TraesCS2A01G295700.1 | Wheat | nucleus | 96.61 | 96.61 |
| Os04t0413900-01 | Rice | nucleus | 81.78 | 78.78 |
| OQU81531 | Sorghum | nucleus | 77.97 | 73.02 |
| Zm00001d003775_P001 | Maize | cytosol, mitochondrion, nucleus | 75.85 | 72.18 |
| VIT_06s0080g00750.t01 | Wine grape | cytosol | 14.83 | 70.0 |
| Solyc10g083260.1.1 | Tomato | nucleus | 16.53 | 52.7 |
| GSMUA_Achr6P06990_001 | Banana | mitochondrion, nucleus | 33.9 | 47.34 |
| TraesCS5B01G126400.1 | Wheat | cytosol | 28.81 | 43.31 |
| TraesCS3B01G407500.1 | Wheat | nucleus | 34.75 | 38.14 |
| KRH67951 | Soybean | cytosol, plastid | 33.47 | 36.24 |
| CDY32323 | Canola | nucleus | 31.78 | 36.23 |
| KRH30402 | Soybean | nucleus | 35.17 | 35.62 |
| Bra027283.1-P | Field mustard | nucleus | 32.2 | 35.35 |
| TraesCS2B01G407800.1 | Wheat | nucleus | 30.08 | 35.32 |
| VIT_08s0007g02950.t01 | Wine grape | nucleus | 32.63 | 35.32 |
| CDX97628 | Canola | nucleus | 31.78 | 34.72 |
| PGSC0003DMT400015061 | Potato | cytosol, mitochondrion, nucleus, plastid | 32.63 | 34.68 |
| KRH22667 | Soybean | nucleus | 36.02 | 34.55 |
| Bra021587.1-P | Field mustard | nucleus | 32.2 | 34.55 |
| PGSC0003DMT400023089 | Potato | cytosol | 34.75 | 34.17 |
| CDY20098 | Canola | nucleus | 29.66 | 33.98 |
| KRH26654 | Soybean | cytosol | 34.75 | 33.88 |
| Solyc09g010140.1.1 | Tomato | cytosol | 34.32 | 33.75 |
| Bra001580.1-P | Field mustard | nucleus | 31.78 | 33.33 |
| CDX82452 | Canola | nucleus | 31.78 | 33.33 |
| CDY68595 | Canola | nucleus | 30.51 | 33.33 |
| PGSC0003DMT400072600 | Potato | nucleus | 33.9 | 33.2 |
| CDX75803 | Canola | nucleus | 31.78 | 31.78 |
| AT3G15040.1 | Thale cress | nucleus | 32.2 | 31.28 |
| TraesCS4B01G397900.1 | Wheat | cytosol | 27.54 | 30.66 |
| KRH25262 | Soybean | nucleus | 30.93 | 30.17 |
| TraesCS2B01G286300.1 | Wheat | mitochondrion, nucleus | 22.88 | 30.0 |
| TraesCS1B01G174100.1 | Wheat | mitochondrion | 22.88 | 29.83 |
| TraesCS2B01G247900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 21.19 | 29.59 |
| KRG96207 | Soybean | plastid | 33.05 | 29.32 |
| TraesCS2B01G397000.1 | Wheat | mitochondrion | 21.19 | 28.09 |
| TraesCS6B01G258900.1 | Wheat | nucleus | 20.34 | 27.75 |
| Solyc06g074260.2.1 | Tomato | cytosol | 31.36 | 19.17 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G312200.1 | EnsemblPlantsGene:TraesCS2B01G312200 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF15 | PFAM:PF04520 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:447490322..447491032
Molecular Weight (calculated)
24867.1 Da
IEP (calculated)
9.682
GRAVY (calculated)
-0.499
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEYRPRRSP ATERFVGLFS SPSSSPTESS FVAGDEFHED DFMFSSASDA RPDGPGSPTR VPHSHLGLLA ALHEGDKRLL VRRAGVGSGA AASAVAATPA
101: TLLRRKATIA AATSASGGSL SPTQSPASAA WAIPANPRPK NRAPAPQYHQ SAPVKVPVRP PPKPAMDKWD ELDDDDELRH GDAAMLPPHE MVARASAGGA
201: GPAAPFSMLE GAGRTLKGRD LRRVRDAVLR QTGWLD
101: TLLRRKATIA AATSASGGSL SPTQSPASAA WAIPANPRPK NRAPAPQYHQ SAPVKVPVRP PPKPAMDKWD ELDDDDELRH GDAAMLPPHE MVARASAGGA
201: GPAAPFSMLE GAGRTLKGRD LRRVRDAVLR QTGWLD
001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
Arabidopsis Description
At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.