Factsheet for PGSC0003DMT400072600

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g083260.1.1	Tomato	nucleus	30.29	98.65
PGSC0003DMT400023089	Potato	cytosol	69.71	70.0
GSMUA_Achr6P06990_001	Banana	mitochondrion, nucleus	31.95	45.56
KRH67951	Soybean	cytosol, plastid	39.83	44.04
PGSC0003DMT400045373	Potato	cytosol	22.82	37.41
PGSC0003DMT400020798	Potato	plastid	25.31	35.88
PGSC0003DMT400062500	Potato	nucleus	25.31	35.67
PGSC0003DMT400015061	Potato	cytosol, mitochondrion, nucleus, plastid	32.78	35.59
PGSC0003DMT400090902	Potato	cytosol, plastid	30.29	35.27
EER94255	Sorghum	mitochondrion, nucleus	34.85	34.85
Os04t0413900-01	Rice	nucleus	35.27	34.69
KRG96207	Soybean	plastid	38.17	34.59
Zm00001d003775_P001	Maize	cytosol, mitochondrion, nucleus	35.27	34.27
TraesCS2B01G312200.1	Wheat	nucleus	33.2	33.9
OQU81531	Sorghum	nucleus	35.27	33.73
TraesCS2D01G293600.1	Wheat	nucleus	33.2	33.33
TraesCS2A01G295700.1	Wheat	nucleus	31.95	32.63
Zm00001d032976_P001	Maize	mitochondrion, nucleus	33.61	32.02
PGSC0003DMT400055482	Potato	cytosol	19.5	29.38
PGSC0003DMT400032972	Potato	mitochondrion	23.24	28.14
PGSC0003DMT400042431	Potato	mitochondrion, nucleus	24.07	28.02
PGSC0003DMT400057474	Potato	nucleus	22.41	27.84
PGSC0003DMT400042495	Potato	nucleus	16.6	26.14

Protein Annotations

EnsemblPlants:PGSC0003DMT400072600	EnsemblPlantsGene:PGSC0003DMG400028250	EntrezGene:102585652	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF42
PFAM:PF04520	PGSC:PGSC0003DMG400028250	RefSeq:XP_006339317.2	SEG:seg	UniParc:UPI0002953FA0	UniProt:M1CQM5
MapMan:35.2	:	:	:	:	:

Description

OJ000126_13.10 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028250]

Coordinates

chr10:+:55880586..55881576

Molecular Weight (calculated)

26482.8 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.663

Length

241 amino acids

Sequence
(BLAST)

001: MDQNGVVSFR HRQSPSSDRF LGVFSPPLSD AALVGGTDEP VADDDELNED DVFWTGRVLT ESQLRSTSPS RNSFRQPEKF GILAALVEDQ QKTNLPVVRR
101: KPSIASSPSS TDSISQSPIS SSPSTVIPFS RAFPSIHKPP SGNNNFSHSK SMPARNFQHS APVNVPMMAK KAPKHGDLAE VEIDDDDADD EMLPPHEMVA
201: RGSMRSPRTT FSVLEGVGRT LKGRDLRQVR NAVWRQTGFQ D

Best Arabidopsis Sequence Match ( AT3G15040.1 )
(BLAST)

001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID

Arabidopsis Description

At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.