Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g064650.1.1 | Tomato | nucleus | 79.38 | 86.52 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 34.02 | 48.89 |
| PGSC0003DMT400042495 | Potato | nucleus | 30.93 | 39.22 |
| PGSC0003DMT400045373 | Potato | cytosol | 28.35 | 37.41 |
| PGSC0003DMT400020798 | Potato | plastid | 30.93 | 35.29 |
| PGSC0003DMT400062500 | Potato | nucleus | 30.93 | 35.09 |
| PGSC0003DMT400055482 | Potato | cytosol | 28.35 | 34.38 |
| PGSC0003DMT400090902 | Potato | cytosol, plastid | 29.38 | 27.54 |
| PGSC0003DMT400042431 | Potato | mitochondrion, nucleus | 28.87 | 27.05 |
| PGSC0003DMT400032972 | Potato | mitochondrion | 27.32 | 26.63 |
| PGSC0003DMT400015061 | Potato | cytosol, mitochondrion, nucleus, plastid | 26.29 | 22.97 |
| PGSC0003DMT400023089 | Potato | cytosol | 28.35 | 22.92 |
| PGSC0003DMT400072600 | Potato | nucleus | 27.84 | 22.41 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400057474 | EnsemblPlantsGene:PGSC0003DMG400022315 | EntrezGene:102579297 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF4 |
| PFAM:PF04520 | PGSC:PGSC0003DMG400022315 | RefSeq:XP_006346209.1 | SEG:seg | UniParc:UPI0002956FF9 | UniProt:M1C149 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022315]
Coordinates
chr7:+:54893564..54895112
Molecular Weight (calculated)
22104.2 Da
IEP (calculated)
4.881
GRAVY (calculated)
-1.093
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPSSEGRYN LYSQGSSGWT SMRNDEFQEE EIWGNFTDER REFGSNFSRN KESSPIFSPR RLPTAAKMIQ RSSKSSIQEP KIIQYSAPVN VPDWSKIYGT
101: SSKKISWHDD DNDNDYGGGG HNLVRNSSKF DEENDDDDDD DEGEMMPPHE WIAKKLERSK ISSFSVCEGV GRTLKGRDLS RVRNAILSKT GFLE
101: SSKKISWHDD DNDNDYGGGG HNLVRNSSKF DEENDDDDDD DEGEMMPPHE WIAKKLERSK ISSFSVCEGV GRTLKGRDLS RVRNAILSKT GFLE
001: MDSLGSRRRT HNSRRVPSMG IEGDEEFQEE DVWSVLREGE TSSPEMKIPK SHFSSSSSSS SSPWNIRRSK EVSGVKQSSA PMNVPDWSKV YGDSKSNRRS
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q8LFI5]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.