Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s1488g00010.t01 | Wine grape | cytosol | 42.22 | 57.58 |
| CDX82889 | Canola | nucleus | 48.89 | 43.42 |
| KRH20851 | Soybean | nucleus | 51.85 | 42.94 |
| PGSC0003DMT400042495 | Potato | nucleus | 48.15 | 42.48 |
| CDY29096 | Canola | nucleus | 46.67 | 42.0 |
| CDX94568 | Canola | nucleus | 46.67 | 42.0 |
| Bra013577.1-P | Field mustard | nucleus | 47.41 | 41.83 |
| CDX79115 | Canola | nucleus | 47.41 | 41.83 |
| Bra029510.1-P | Field mustard | nucleus | 45.93 | 41.61 |
| AT4G21970.1 | Thale cress | nucleus | 48.15 | 41.4 |
| CDX98721 | Canola | nucleus | 48.15 | 41.4 |
| Bra019408.1-P | Field mustard | nucleus | 48.15 | 41.4 |
| CDX94069 | Canola | nucleus | 47.41 | 40.76 |
| Solyc02g080580.1.1 | Tomato | nucleus | 46.67 | 40.65 |
| VIT_10s0116g01720.t01 | Wine grape | cytosol, mitochondrion, nucleus | 56.3 | 40.0 |
| AT4G04630.1 | Thale cress | cytosol, mitochondrion, nucleus | 48.89 | 39.29 |
| KRH33098 | Soybean | cytosol | 37.78 | 39.23 |
| Solyc07g064650.1.1 | Tomato | nucleus | 51.11 | 38.76 |
| KRH02067 | Soybean | nucleus | 52.59 | 38.38 |
| CDY16655 | Canola | nucleus | 47.41 | 38.32 |
| KRH51093 | Soybean | nucleus | 53.33 | 38.1 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.26 | 37.68 |
| KRH14391 | Soybean | nucleus | 51.11 | 36.32 |
| GSMUA_Achr7P00240_001 | Banana | extracellular | 22.96 | 36.05 |
| KRH73758 | Soybean | nucleus | 49.63 | 34.36 |
| PGSC0003DMT400057474 | Potato | nucleus | 48.89 | 34.02 |
| CDX92790 | Canola | nucleus | 37.04 | 33.56 |
| CDY46674 | Canola | nucleus | 37.04 | 33.33 |
| AT4G26950.1 | Thale cress | nucleus | 35.56 | 33.33 |
| Bra019080.1-P | Field mustard | nucleus | 37.04 | 33.11 |
| GSMUA_Achr11P... | Banana | mitochondrion | 34.81 | 32.87 |
| GSMUA_Achr11P... | Banana | cytosol | 26.67 | 32.43 |
| GSMUA_Achr8P18920_001 | Banana | cytosol, mitochondrion | 37.78 | 31.48 |
| KRH46190 | Soybean | cytosol | 48.89 | 31.13 |
| GSMUA_Achr6P06990_001 | Banana | mitochondrion, nucleus | 37.78 | 30.18 |
| VIT_19s0090g00510.t01 | Wine grape | plastid | 49.63 | 28.88 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 34.81 | 28.66 |
| KRG98750 | Soybean | nucleus | 39.26 | 25.48 |
| GSMUA_Achr6P00350_001 | Banana | cytosol, nucleus, plastid | 31.11 | 24.56 |
| GSMUA_Achr4P33500_001 | Banana | nucleus | 31.85 | 23.5 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.11 | 23.08 |
| GSMUA_Achr10P... | Banana | nucleus | 33.33 | 21.95 |
| GSMUA_Achr1P04050_001 | Banana | mitochondrion | 29.63 | 20.1 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P13950_001 | EnsemblPlants:GSMUA_Achr2T13950_001 | EnsemblPlantsGene:GSMUA_Achr2G13950_001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF4 |
| PFAM:PF04520 | SEG:seg | UniParc:UPI000296BCFC | UniProt:M0S7T6 | MapMan:35.2 | : |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G13950_001]
Coordinates
chr2:+:15884098..15884595
Molecular Weight (calculated)
14869.9 Da
IEP (calculated)
4.690
GRAVY (calculated)
-1.126
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MADGDEDFEE EEVWAVVMER KEASSPRSRR ASGRDRKQSA PVSIPDWSKV YGHGQGPSSV ATGDEDGCDR RGGTSENDED DEDDDRAPPH EWLAKKMARS
101: QISSSSVCEG AGRTLKGRDL RKVRNAVLTK TGFLE
101: QISSSSVCEG AGRTLKGRDL RKVRNAVLTK TGFLE
001: MDSLGSRRRT HNSRRVPSMG IEGDEEFQEE DVWSVLREGE TSSPEMKIPK SHFSSSSSSS SSPWNIRRSK EVSGVKQSSA PMNVPDWSKV YGDSKSNRRS
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q8LFI5]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.