Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029510.1-P | Field mustard | nucleus | 86.23 | 96.64 |
| CDY29096 | Canola | nucleus | 83.83 | 93.33 |
| CDX94568 | Canola | nucleus | 83.23 | 92.67 |
| AT4G04630.1 | Thale cress | cytosol, mitochondrion, nucleus | 76.65 | 76.19 |
| CDX98721 | Canola | nucleus | 57.48 | 61.15 |
| CDX94069 | Canola | nucleus | 57.48 | 61.15 |
| CDX82889 | Canola | nucleus | 55.09 | 60.53 |
| CDX79115 | Canola | nucleus | 55.09 | 60.13 |
| VIT_00s1488g00010.t01 | Wine grape | cytosol | 34.73 | 58.59 |
| KRH20851 | Soybean | nucleus | 47.31 | 48.47 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 38.32 | 47.41 |
| VIT_10s0116g01720.t01 | Wine grape | cytosol, mitochondrion, nucleus | 50.3 | 44.21 |
| PGSC0003DMT400042495 | Potato | nucleus | 37.13 | 40.52 |
| KRH51093 | Soybean | nucleus | 45.51 | 40.21 |
| Solyc02g080580.1.1 | Tomato | nucleus | 36.53 | 39.35 |
| KRH02067 | Soybean | nucleus | 43.11 | 38.92 |
| CDY46674 | Canola | nucleus | 31.14 | 34.67 |
| CDX92790 | Canola | nucleus | 30.54 | 34.23 |
| CDY62461 | Canola | nucleus | 28.74 | 30.38 |
| CDX77180 | Canola | nucleus | 29.34 | 29.7 |
| CDY65979 | Canola | nucleus | 27.54 | 28.93 |
| CDX79110 | Canola | nucleus | 29.34 | 28.32 |
| CDX82885 | Canola | nucleus | 28.74 | 27.75 |
| CDY10396 | Canola | nucleus | 27.54 | 26.14 |
| CDX70321 | Canola | nucleus | 27.54 | 26.14 |
| CDX80857 | Canola | cytosol | 27.54 | 25.7 |
| CDY11244 | Canola | cytosol | 26.95 | 25.28 |
| CDY20098 | Canola | nucleus | 31.14 | 25.24 |
| CDY12918 | Canola | cytosol | 28.74 | 24.24 |
| CDY32323 | Canola | nucleus | 29.94 | 24.15 |
| CDY19509 | Canola | cytosol | 28.14 | 23.74 |
| CDX97628 | Canola | nucleus | 29.94 | 23.15 |
| CDX97979 | Canola | mitochondrion | 28.14 | 23.04 |
| CDY49797 | Canola | mitochondrion | 28.14 | 22.93 |
| CDY34631 | Canola | nucleus | 27.54 | 22.89 |
| CDY68595 | Canola | nucleus | 29.34 | 22.69 |
| CDX82452 | Canola | nucleus | 28.74 | 21.33 |
| CDX75803 | Canola | nucleus | 28.14 | 19.92 |
Protein Annotations
| EnsemblPlants:CDY16655 | EnsemblPlantsGene:GSBRNA2T00094492001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF4 | PFAM:PF04520 |
| ProteinID:CDY16655 | ProteinID:CDY16655.1 | SEG:seg | UniParc:UPI0004EF3699 | UniProt:A0A078FQB5 | MapMan:35.2 |
Description
BnaA09g20330DBnaA09g20330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQB5]
Coordinates
chrLK032066:+:301875..302546
Molecular Weight (calculated)
18813.9 Da
IEP (calculated)
9.241
GRAVY (calculated)
-0.998
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSRAKRSQS SSRKAPAMRL EGEDEFQEED VWSVLREAKT SGHETKIPKS HFSSPSSSTS FTSSPWNIRR SKEVSGEKQS SAPMNVPDWS KIYGNARNKE
101: RSIHNLHSHD EDDDDGCMVP PHEWVARKLA KTQISSFSMC EGVGRTLKGR DLSKMRNAVL TKTGFLE
101: RSIHNLHSHD EDDDDGCMVP PHEWVARKLA KTQISSFSMC EGVGRTLKGR DLSKMRNAVL TKTGFLE
001: MDSLGSRRRT HNSRRVPSMG IEGDEEFQEE DVWSVLREGE TSSPEMKIPK SHFSSSSSSS SSPWNIRRSK EVSGVKQSSA PMNVPDWSKV YGDSKSNRRS
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
101: SHLHSHAADD DDEDDDGCMV PPHEWVARKL ARTQISSFSM CEGVGRTLKG RDLSKVRNAV LSKTGFLE
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q8LFI5]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.