Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002459.1-P | Field mustard | nucleus | 97.48 | 96.88 |
| AT3G45210.1 | Thale cress | nucleus | 63.52 | 68.24 |
| Solyc06g075170.1.1 | Tomato | nucleus | 59.12 | 57.67 |
| KRH22888 | Soybean | cytosol, mitochondrion, nucleus | 54.72 | 56.49 |
| KRH26408 | Soybean | cytosol | 52.83 | 56.38 |
| PGSC0003DMT400020798 | Potato | plastid | 59.75 | 55.88 |
| PGSC0003DMT400062500 | Potato | nucleus | 58.49 | 54.39 |
| Solyc11g069450.1.1 | Tomato | cytosol | 59.12 | 54.34 |
| GSMUA_Achr11P... | Banana | mitochondrion | 39.62 | 44.06 |
| CDY62461 | Canola | nucleus | 40.25 | 40.51 |
| CDX77180 | Canola | nucleus | 41.51 | 40.0 |
| CDY10396 | Canola | nucleus | 44.03 | 39.77 |
| CDX70321 | Canola | nucleus | 43.4 | 39.2 |
| GSMUA_Achr8P18920_001 | Banana | cytosol, mitochondrion | 39.62 | 38.89 |
| CDY11244 | Canola | cytosol | 42.77 | 38.2 |
| CDX80857 | Canola | cytosol | 42.77 | 37.99 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 38.99 | 37.8 |
| Os04t0520700-01 | Rice | mitochondrion | 38.36 | 35.06 |
| TraesCS2D01G376300.1 | Wheat | mitochondrion | 37.11 | 33.33 |
| TraesCS2B01G397000.1 | Wheat | mitochondrion | 37.11 | 33.15 |
| HORVU1Hr1G041890.1 | Barley | mitochondrion | 36.48 | 32.4 |
| HORVU0Hr1G005210.2 | Barley | cytosol, plastid | 35.85 | 32.2 |
| TraesCS1A01G157900.1 | Wheat | mitochondrion | 36.48 | 32.04 |
| TraesCS1B01G174100.1 | Wheat | mitochondrion | 36.48 | 32.04 |
| TraesCS1D01G155400.1 | Wheat | mitochondrion | 36.48 | 32.04 |
| TraesCS2A01G380100.1 | Wheat | mitochondrion | 35.85 | 32.02 |
| Os02t0629000-01 | Rice | mitochondrion | 33.96 | 31.76 |
| Zm00001d003009_P001 | Maize | mitochondrion, nucleus | 36.48 | 31.52 |
| Zm00001d014007_P001 | Maize | cytosol, plastid | 35.22 | 31.28 |
| CDX98721 | Canola | nucleus | 30.19 | 30.57 |
| CDX94069 | Canola | nucleus | 30.19 | 30.57 |
| Zm00001d025872_P001 | Maize | mitochondrion | 34.59 | 30.56 |
| KXG26730 | Sorghum | mitochondrion | 36.48 | 30.37 |
| CDX82889 | Canola | nucleus | 28.3 | 29.61 |
| EER91475 | Sorghum | mitochondrion | 35.22 | 29.47 |
| CDX79115 | Canola | nucleus | 28.3 | 29.41 |
| CDY29096 | Canola | nucleus | 27.04 | 28.67 |
| CDX94568 | Canola | nucleus | 27.04 | 28.67 |
| TraesCS6D01G212800.1 | Wheat | cytosol | 30.82 | 28.32 |
| TraesCS6A01G222200.1 | Wheat | cytosol | 30.82 | 27.84 |
| Zm00001d017287_P001 | Maize | cytosol | 29.56 | 27.65 |
| CDY16655 | Canola | nucleus | 28.93 | 27.54 |
| HORVU0Hr1G016350.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 30.82 | 27.53 |
| TraesCS6B01G258900.1 | Wheat | nucleus | 29.56 | 27.17 |
| CDX82885 | Canola | nucleus | 29.56 | 27.17 |
| CDX79110 | Canola | nucleus | 29.56 | 27.17 |
| CDY12918 | Canola | cytosol | 32.08 | 25.76 |
| CDY46674 | Canola | nucleus | 23.9 | 25.33 |
| CDX92790 | Canola | nucleus | 23.27 | 24.83 |
| CDY19509 | Canola | cytosol | 30.82 | 24.75 |
| CDY34631 | Canola | nucleus | 30.82 | 24.38 |
| CDX97979 | Canola | mitochondrion | 30.82 | 24.02 |
| CDY49797 | Canola | mitochondrion | 30.82 | 23.9 |
| CDX97628 | Canola | nucleus | 28.93 | 21.3 |
| CDY68595 | Canola | nucleus | 28.3 | 20.83 |
| CDX82452 | Canola | nucleus | 28.93 | 20.44 |
| CDY32323 | Canola | nucleus | 26.42 | 20.29 |
| CDY20098 | Canola | nucleus | 25.79 | 19.9 |
| CDX75803 | Canola | nucleus | 28.93 | 19.49 |
| Os10t0481000-00 | Rice | mitochondrion | 26.42 | 14.05 |
Protein Annotations
| EnsemblPlants:CDY65979 | EnsemblPlantsGene:GSBRNA2T00051114001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF9 | PFAM:PF04520 |
| ProteinID:CDY65979 | ProteinID:CDY65979.1 | SEG:seg | UniParc:UPI0004EE54D7 | UniProt:A0A078JGY6 | MapMan:35.2 |
Description
BnaCnng49210DBnaCnng49210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGY6]
Coordinates
chrLK035029:-:9558..10295
Molecular Weight (calculated)
17818.6 Da
IEP (calculated)
9.641
GRAVY (calculated)
-0.814
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGKSYYAR PSYRFLGTDQ SYYAANDSGF EFDESDLYSS DSPDFRRKIS KPVRSVKKSS NRPSTCGASS AAAASSLPVN VPDWSKILRE EHRDNRRRSI
101: VDDDGDWLDA SGGRLPPHEF LAKTRMASFS VHEGLGRTLK GRDLSRVRNA IFEKIGFQD
101: VDDDGDWLDA SGGRLPPHEF LAKTRMASFS VHEGLGRTLK GRDLSRVRNA IFEKIGFQD
001: MATGKSYYAR PSYRFLGTDQ PSYFTASDSG LEFDESDLFN PIHSDSPDFC RKISSSVRSG KKSSNRPSAA SSAAAASSLP VNVPDWSKIL RGEYRDNRRR
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FF51]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.