CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
EES05647
EES06387
EES07517
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45210.1	EES05647	AT3G27960.1	21798944
AT3G45210.1	EES07517	AT3G48150.1	21798944
AT5G03230.1	EES01073	AT2G42580.1	19000166
AT5G03230.1	EES02247	AT2G42580.1	19000166
AT5G03230.1	OQU78515	AT2G42580.1	19000166
AT5G03230.1	EES06387	AT4G31920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003009_P001	Maize	mitochondrion, nucleus	85.34	88.59
Zm00001d025872_P001	Maize	mitochondrion	71.2	75.56
TraesCS2A01G380100.1	Wheat	mitochondrion	69.11	74.16
TraesCS2B01G397000.1	Wheat	mitochondrion	68.59	73.6
Os04t0520700-01	Rice	mitochondrion	67.02	73.56
TraesCS2D01G376300.1	Wheat	mitochondrion	67.54	72.88
HORVU0Hr1G005210.2	Barley	cytosol, plastid	66.49	71.75
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	46.6	54.27
KRH22888	Soybean	cytosol, mitochondrion, nucleus	35.6	44.16
Solyc06g075170.1.1	Tomato	nucleus	36.65	42.94
VIT_06s0004g02830.t01	Wine grape	cytosol	36.65	41.92
PGSC0003DMT400062500	Potato	nucleus	36.13	40.35
PGSC0003DMT400045373	Potato	cytosol	30.89	40.14
KRH26408	Soybean	cytosol	30.37	38.93
PGSC0003DMT400020798	Potato	plastid	34.55	38.82
Solyc11g069450.1.1	Tomato	cytosol	35.08	38.73
VIT_08s0040g01860.t01	Wine grape	cytosol	32.98	38.41
Bra020237.1-P	Field mustard	nucleus	32.98	37.95
AT5G03230.1	Thale cress	nucleus	32.98	37.95
PGSC0003DMT400055482	Potato	cytosol	31.41	37.5
Solyc09g007790.1.1	Tomato	cytosol	30.89	37.34
AT5G60680.1	Thale cress	nucleus	31.41	36.81
AT3G45210.1	Thale cress	nucleus	28.27	36.49
CDY65979	Canola	nucleus	30.37	36.48
KRH25013	Soybean	mitochondrion	31.94	35.88
KRH29916	Soybean	mitochondrion	31.94	35.67
Bra002459.1-P	Field mustard	nucleus	29.84	35.62
Solyc10g086110.1.1	Tomato	cytosol	29.32	35.44
CDX70321	Canola	nucleus	32.46	35.23
CDY10396	Canola	nucleus	32.46	35.23
CDY62461	Canola	nucleus	28.8	34.81
Bra009543.1-P	Field mustard	nucleus	31.94	34.66
KRG95986	Soybean	nucleus	27.23	34.21
EER91475	Sorghum	mitochondrion	34.03	34.21
AT2G28400.1	Thale cress	mitochondrion	28.8	33.95
CDX77180	Canola	nucleus	29.32	33.94
KRH67690	Soybean	cytosol	29.32	33.73
Bra005738.1-P	Field mustard	cytosol	31.41	33.71
CDX80857	Canola	cytosol	31.41	33.52
KRH19865	Soybean	mitochondrion	31.41	33.33
CDY11244	Canola	cytosol	30.89	33.15
KRH32477	Soybean	cytosol	31.94	32.45
EES11200	Sorghum	mitochondrion	32.46	28.7
EER97815	Sorghum	mitochondrion	24.61	27.98
EES15690	Sorghum	cytosol, mitochondrion, plastid	24.08	26.59
EER99449	Sorghum	mitochondrion	25.65	25.26
EES01798	Sorghum	mitochondrion, nucleus	26.7	24.64
OQU81531	Sorghum	nucleus	28.8	21.83
Bra035703.1-P	Field mustard	cytosol	26.7	20.73
EER94255	Sorghum	mitochondrion, nucleus	25.13	19.92

Protein Annotations

EnsemblPlants:KXG26730	EnsemblPlantsGene:SORBI_3006G149700	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF40	PFAM:PF04520
ProteinID:KXG26730	ProteinID:KXG26730.1	SEG:seg	UniParc:UPI00081AB414	UniProt:A0A1B6PM40	MapMan:35.2

Description

hypothetical protein

Coordinates

chr6:-:51115120..51116554

Molecular Weight (calculated)

19620.6 Da

IEP (calculated)

7.186

GRAVY (calculated)

-0.613

Length

191 amino acids

Sequence
(BLAST)

001: MAGSARSSAA AKHAYRMFAP SRGGGAATRG PGAGAAEEFD ESDVVWGSFG GGGGADSHSS PGAELQAAAG WARPIPASRA GAGRKKPAAV DGGGAAGSLP
101: MNIPDWQKIL GVEYRDHYRA GEWEPDADDD DHGRARGGGG AGAEMVPPHE LAWRSRAASM SVHEGIGRTL KGRDLSRVRD AVWKKTGFEA D

Best Arabidopsis Sequence Match ( AT5G60680.1 )
(BLAST)

001: MATGKSYYAR PSYRFLGTDQ PSYFTASDSG LEFDESDLFN PIHSDSPDFC RKISSSVRSG KKSSNRPSAA SSAAAASSLP VNVPDWSKIL RGEYRDNRRR
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FF51]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.