Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009543.1-P | Field mustard | nucleus | 96.59 | 96.59 |
| CDX70321 | Canola | nucleus | 96.02 | 96.02 |
| CDY11244 | Canola | cytosol | 82.95 | 82.02 |
| AT5G03230.1 | Thale cress | nucleus | 76.7 | 81.33 |
| CDX80857 | Canola | cytosol | 82.39 | 81.01 |
| CDY65979 | Canola | nucleus | 39.77 | 44.03 |
| GSMUA_Achr8P18920_001 | Banana | cytosol, mitochondrion | 38.64 | 41.98 |
| GSMUA_Achr11P... | Banana | mitochondrion | 33.52 | 41.26 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 32.95 | 35.37 |
| Os04t0520700-01 | Rice | mitochondrion | 34.66 | 35.06 |
| Zm00001d003009_P001 | Maize | mitochondrion, nucleus | 36.36 | 34.78 |
| HORVU1Hr1G041890.1 | Barley | mitochondrion | 35.23 | 34.64 |
| TraesCS1D01G155400.1 | Wheat | mitochondrion | 34.66 | 33.7 |
| TraesCS1B01G174100.1 | Wheat | mitochondrion | 34.66 | 33.7 |
| TraesCS1A01G157900.1 | Wheat | mitochondrion | 34.66 | 33.7 |
| Os02t0629000-01 | Rice | mitochondrion | 32.39 | 33.53 |
| Zm00001d014007_P001 | Maize | cytosol, plastid | 34.09 | 33.52 |
| EER91475 | Sorghum | mitochondrion | 35.23 | 32.63 |
| KXG26730 | Sorghum | mitochondrion | 35.23 | 32.46 |
| TraesCS2B01G397000.1 | Wheat | mitochondrion | 32.39 | 32.02 |
| TraesCS2A01G380100.1 | Wheat | mitochondrion | 32.39 | 32.02 |
| Zm00001d025872_P001 | Maize | mitochondrion | 32.39 | 31.67 |
| CDX94069 | Canola | nucleus | 27.84 | 31.21 |
| CDX98721 | Canola | nucleus | 27.84 | 31.21 |
| Zm00001d017287_P001 | Maize | cytosol | 30.11 | 31.18 |
| TraesCS2D01G376300.1 | Wheat | mitochondrion | 31.25 | 31.07 |
| TraesCS6A01G222200.1 | Wheat | cytosol | 29.55 | 29.55 |
| TraesCS6D01G212800.1 | Wheat | cytosol | 28.98 | 29.48 |
| TraesCS6B01G258900.1 | Wheat | nucleus | 28.98 | 29.48 |
| CDX79115 | Canola | nucleus | 25.57 | 29.41 |
| HORVU0Hr1G005210.2 | Barley | cytosol, plastid | 29.55 | 29.38 |
| HORVU0Hr1G016350.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 29.55 | 29.21 |
| CDX77180 | Canola | nucleus | 27.27 | 29.09 |
| CDX82889 | Canola | nucleus | 25.0 | 28.95 |
| CDY29096 | Canola | nucleus | 24.43 | 28.67 |
| CDX94568 | Canola | nucleus | 24.43 | 28.67 |
| CDY62461 | Canola | nucleus | 25.57 | 28.48 |
| CDY16655 | Canola | nucleus | 26.14 | 27.54 |
| CDY34631 | Canola | nucleus | 28.41 | 24.88 |
| CDX97979 | Canola | mitochondrion | 27.84 | 24.02 |
| CDY12918 | Canola | cytosol | 26.7 | 23.74 |
| CDX82885 | Canola | nucleus | 23.3 | 23.7 |
| CDY49797 | Canola | mitochondrion | 27.27 | 23.41 |
| CDY46674 | Canola | nucleus | 19.89 | 23.33 |
| CDX79110 | Canola | nucleus | 22.73 | 23.12 |
| CDY19509 | Canola | cytosol | 25.57 | 22.73 |
| CDX97628 | Canola | nucleus | 27.27 | 22.22 |
| CDX92790 | Canola | nucleus | 18.75 | 22.15 |
| CDY68595 | Canola | nucleus | 26.7 | 21.76 |
| CDY32323 | Canola | nucleus | 25.0 | 21.26 |
| CDX82452 | Canola | nucleus | 26.14 | 20.44 |
| CDY20098 | Canola | nucleus | 23.3 | 19.9 |
| CDX75803 | Canola | nucleus | 25.57 | 19.07 |
| Os10t0481000-00 | Rice | mitochondrion | 26.7 | 15.72 |
Protein Annotations
| EnsemblPlants:CDY10396 | EnsemblPlantsGene:GSBRNA2T00032306001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF9 | PFAM:PF04520 |
| ProteinID:CDY10396 | ProteinID:CDY10396.1 | SEG:seg | UniParc:UPI0004EF0174 | UniProt:A0A078FAF8 | MapMan:35.2 |
Description
BnaCnng02970DBnaCnng02970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAF8]
Coordinates
chrLK032003:-:243690..244462
Molecular Weight (calculated)
20044.3 Da
IEP (calculated)
6.405
GRAVY (calculated)
-0.991
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MASMKHFFAK PKHIYPQPEP VMSENDKNVF EFDESDIHSL GDHQKPSSFE AKRSISISRL RRKPAKVADS SGLDNRKTAK TGSVPVNIPD WSKILKSEYR
101: SHVVMPDYDS DEDDEDDEEI NDGDTTGGRR MIPPHEYLAR RRGSSFTVHE GIGGTDKGRD LRLLRNAIWE KIGFQD
101: SHVVMPDYDS DEDDEDDEEI NDGDTTGGRR MIPPHEYLAR RRGSSFTVHE GIGGTDKGRD LRLLRNAIWE KIGFQD
001: MASRKLFFVK PKYIYPEPKP EMSDENVFEF DESDIHNLGD HQLPNSFDAK RSISISRLRR KPTKTGDSGN REITKTGSLP VNIPDWSKIL KSEYRGHAIP
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD
Arabidopsis Description
Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 [Source:UniProtKB/TrEMBL;Acc:Q9LYW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.