CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
EES05647
EES06387
EES07517
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45210.1	EES05647	AT3G27960.1	21798944
AT3G45210.1	EES07517	AT3G48150.1	21798944
AT5G03230.1	EES01073	AT2G42580.1	19000166
AT5G03230.1	EES02247	AT2G42580.1	19000166
AT5G03230.1	OQU78515	AT2G42580.1	19000166
AT5G03230.1	EES06387	AT4G31920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014007_P001	Maize	cytosol, plastid	84.21	89.39
TraesCS1A01G157900.1	Wheat	mitochondrion	60.0	62.98
TraesCS1D01G155400.1	Wheat	mitochondrion	59.47	62.43
HORVU1Hr1G041890.1	Barley	mitochondrion	58.42	62.01
TraesCS1B01G174100.1	Wheat	mitochondrion	57.89	60.77
GSMUA_Achr11P...	Banana	mitochondrion	36.32	48.25
GSMUA_Achr8P18920_001	Banana	cytosol, mitochondrion	36.84	43.21
Solyc06g075170.1.1	Tomato	nucleus	35.79	41.72
KRH22888	Soybean	cytosol, mitochondrion, nucleus	33.16	40.91
KRH26408	Soybean	cytosol	31.58	40.27
PGSC0003DMT400045373	Potato	cytosol	31.05	40.14
VIT_06s0004g02830.t01	Wine grape	cytosol	34.74	39.52
PGSC0003DMT400062500	Potato	nucleus	35.26	39.18
PGSC0003DMT400020798	Potato	plastid	33.68	37.65
KRG95986	Soybean	nucleus	30.0	37.5
AT5G03230.1	Thale cress	nucleus	32.63	37.35
Solyc11g069450.1.1	Tomato	cytosol	33.68	36.99
KRH25013	Soybean	mitochondrion	32.63	36.47
AT2G28400.1	Thale cress	mitochondrion	31.05	36.42
PGSC0003DMT400055482	Potato	cytosol	30.53	36.25
KRH67690	Soybean	cytosol	31.58	36.14
CDY62461	Canola	nucleus	30.0	36.08
Solyc10g086110.1.1	Tomato	cytosol	30.0	36.08
EES15690	Sorghum	cytosol, mitochondrion, plastid	32.63	35.84
Bra002459.1-P	Field mustard	nucleus	30.0	35.62
AT5G60680.1	Thale cress	nucleus	30.53	35.58
Bra020237.1-P	Field mustard	nucleus	31.05	35.54
Solyc09g007790.1.1	Tomato	cytosol	29.47	35.44
VIT_08s0040g01860.t01	Wine grape	cytosol	30.53	35.37
CDY10396	Canola	nucleus	32.63	35.23
CDX70321	Canola	nucleus	32.63	35.23
CDY65979	Canola	nucleus	29.47	35.22
CDX77180	Canola	nucleus	30.53	35.15
AT3G45210.1	Thale cress	nucleus	27.37	35.14
KRH29916	Soybean	mitochondrion	31.58	35.09
Bra009543.1-P	Field mustard	nucleus	32.11	34.66
KRH32477	Soybean	cytosol	33.68	34.04
KXG26730	Sorghum	mitochondrion	34.21	34.03
KRH19865	Soybean	mitochondrion	32.11	33.89
CDY11244	Canola	cytosol	30.53	32.58
Bra005738.1-P	Field mustard	cytosol	30.53	32.58
CDX80857	Canola	cytosol	30.0	31.84
EER99449	Sorghum	mitochondrion	31.05	30.41
EES01798	Sorghum	mitochondrion, nucleus	32.63	29.95
EER97815	Sorghum	mitochondrion	25.26	28.57
EES11200	Sorghum	mitochondrion	31.05	27.31
Os10t0481000-00	Rice	mitochondrion	41.05	26.09
EER94255	Sorghum	mitochondrion, nucleus	28.95	22.82
OQU81531	Sorghum	nucleus	30.0	22.62
Bra035703.1-P	Field mustard	cytosol	28.42	21.95

Protein Annotations

EnsemblPlants:EER91475	EnsemblPlantsGene:SORBI_3001G217000	EntrezGene:8067405	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF9
PFAM:PF04520	ProteinID:EER91475	ProteinID:EER91475.1	RefSeq:XP_002464477.1	SEG:seg	unigene:Sbi.10651
UniParc:UPI0001A82519	UniProt:C5WYD2	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:20071759..20072774

Molecular Weight (calculated)

19647.7 Da

IEP (calculated)

9.306

GRAVY (calculated)

-0.401

Length

190 amino acids

Sequence
(BLAST)

001: MAGRRSSLSM VASHRLFAPA VHPVGGAAAD HGVELDEADV IWGGGGQTSS SPSSSSSFLS SAADPYARSP PVAAPSSKQK PRGAGGAPAP GPASVPVNIP
101: DWSKILGAEY AGSCAAARAA GWAAHDDRAD FFTDDCGTGG RRWVPPHEVV QGRDRAAASF SVREGVGRTL KGRDLRRVRN AIWEKTGFQD

Best Arabidopsis Sequence Match ( AT5G03230.1 )
(BLAST)

001: MASRKLFFVK PKYIYPEPKP EMSDENVFEF DESDIHNLGD HQLPNSFDAK RSISISRLRR KPTKTGDSGN REITKTGSLP VNIPDWSKIL KSEYRGHAIP
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD

Arabidopsis Description

Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 [Source:UniProtKB/TrEMBL;Acc:Q9LYW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.