Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g086840.2.1 | |
| Solyc03g113740.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G45210.1 | Solyc02g086840.2.1 | AT3G27960.1 | 21798944 |
| AT3G45210.1 | Solyc03g113740.2.1 | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400062500 | Potato | nucleus | 96.93 | 92.4 |
| Solyc11g069450.1.1 | Tomato | cytosol | 73.62 | 69.36 |
| VIT_06s0004g02830.t01 | Wine grape | cytosol | 65.64 | 64.07 |
| KRH22888 | Soybean | cytosol, mitochondrion, nucleus | 56.44 | 59.74 |
| CDY65979 | Canola | nucleus | 57.67 | 59.12 |
| KRH26408 | Soybean | cytosol | 53.99 | 59.06 |
| Bra002459.1-P | Field mustard | nucleus | 57.67 | 58.75 |
| AT5G60680.1 | Thale cress | nucleus | 57.06 | 57.06 |
| Bra020237.1-P | Field mustard | nucleus | 56.44 | 55.42 |
| AT3G45210.1 | Thale cress | nucleus | 48.47 | 53.38 |
| Solyc09g007790.1.1 | Tomato | cytosol | 47.24 | 48.73 |
| GSMUA_Achr11P... | Banana | mitochondrion | 42.33 | 48.25 |
| KRH25013 | Soybean | mitochondrion | 50.31 | 48.24 |
| GSMUA_Achr8P18920_001 | Banana | cytosol, mitochondrion | 47.24 | 47.53 |
| Solyc10g086110.1.1 | Tomato | cytosol | 46.01 | 47.47 |
| KRH29916 | Soybean | mitochondrion | 49.69 | 47.37 |
| Solyc10g083260.1.1 | Tomato | nucleus | 21.47 | 47.3 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 42.33 | 42.07 |
| Os04t0520700-01 | Rice | mitochondrion | 44.17 | 41.38 |
| HORVU0Hr1G005210.2 | Barley | cytosol, plastid | 42.33 | 38.98 |
| TraesCS2A01G380100.1 | Wheat | mitochondrion | 42.33 | 38.76 |
| TraesCS1A01G157900.1 | Wheat | mitochondrion | 42.94 | 38.67 |
| TraesCS1B01G174100.1 | Wheat | mitochondrion | 42.94 | 38.67 |
| TraesCS1D01G155400.1 | Wheat | mitochondrion | 42.94 | 38.67 |
| CDY62461 | Canola | nucleus | 37.42 | 38.61 |
| HORVU1Hr1G041890.1 | Barley | mitochondrion | 42.33 | 38.55 |
| TraesCS2D01G376300.1 | Wheat | mitochondrion | 41.72 | 38.42 |
| CDX77180 | Canola | nucleus | 38.65 | 38.18 |
| AT2G28400.1 | Thale cress | mitochondrion | 37.42 | 37.65 |
| TraesCS2B01G397000.1 | Wheat | mitochondrion | 41.1 | 37.64 |
| Zm00001d003009_P001 | Maize | mitochondrion, nucleus | 42.33 | 37.5 |
| Os02t0629000-01 | Rice | mitochondrion | 38.65 | 37.06 |
| Zm00001d014007_P001 | Maize | cytosol, plastid | 40.49 | 36.87 |
| KXG26730 | Sorghum | mitochondrion | 42.94 | 36.65 |
| EER91475 | Sorghum | mitochondrion | 41.72 | 35.79 |
| TraesCS6D01G212800.1 | Wheat | cytosol | 36.81 | 34.68 |
| Zm00001d025872_P001 | Maize | mitochondrion | 38.04 | 34.44 |
| Zm00001d017287_P001 | Maize | cytosol | 35.58 | 34.12 |
| TraesCS6B01G258900.1 | Wheat | nucleus | 36.2 | 34.1 |
| Solyc07g064650.1.1 | Tomato | nucleus | 36.81 | 33.71 |
| HORVU0Hr1G016350.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 36.81 | 33.71 |
| TraesCS6A01G222200.1 | Wheat | cytosol | 36.2 | 33.52 |
| Solyc02g080580.1.1 | Tomato | nucleus | 29.45 | 30.97 |
| Solyc02g032800.1.1 | Tomato | nucleus | 37.42 | 28.37 |
| Solyc02g080510.1.1 | Tomato | mitochondrion | 35.58 | 28.16 |
| Solyc03g082610.1.1 | Tomato | plastid | 34.97 | 27.54 |
| Bra035703.1-P | Field mustard | cytosol | 35.58 | 23.58 |
| Solyc09g010140.1.1 | Tomato | cytosol | 34.36 | 23.33 |
| Os10t0481000-00 | Rice | mitochondrion | 29.45 | 16.05 |
| Solyc06g074260.2.1 | Tomato | cytosol | 31.29 | 13.21 |
Protein Annotations
| EnsemblPlants:Solyc06g075170.1.1 | EnsemblPlantsGene:Solyc06g075170.1 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF9 | PFAM:PF04520 |
| SEG:seg | UniParc:UPI000276698C | UniProt:K4C9N3 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr6:-:46654424..46654915
Molecular Weight (calculated)
18684.5 Da
IEP (calculated)
6.541
GRAVY (calculated)
-0.917
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASRSYFAT ANYRFLSTEP DVAMTPDSVF EFDESDVWNS STVSRSPEFR KKSPSSRISR KQCETKSYRK CSGATAASLP VNVPDWSKIL KDEYREYGRR
101: DSDDDVDDDD LDNRIPPHEF LAKQLERTRI ASFSVHEGVG RTLKGRDLSR VRNAIWEKTG FQD
101: DSDDDVDDDD LDNRIPPHEF LAKQLERTRI ASFSVHEGVG RTLKGRDLSR VRNAIWEKTG FQD
001: MATGKSYYAR PSYRFLGTDQ PSYFTASDSG LEFDESDLFN PIHSDSPDFC RKISSSVRSG KKSSNRPSAA SSAAAASSLP VNVPDWSKIL RGEYRDNRRR
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FF51]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.