Factsheet for Bra020237.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002459.1-P	Field mustard	nucleus	80.72	83.75
AT5G60680.1	Thale cress	nucleus	77.71	79.14
KRH22888	Soybean	cytosol, mitochondrion, nucleus	54.82	59.09
KRH26408	Soybean	cytosol	51.81	57.72
Solyc06g075170.1.1	Tomato	nucleus	55.42	56.44
PGSC0003DMT400020798	Potato	plastid	55.42	54.12
PGSC0003DMT400062500	Potato	nucleus	55.42	53.8
Solyc11g069450.1.1	Tomato	cytosol	54.82	52.6
GSMUA_Achr11P...	Banana	mitochondrion	37.95	44.06
GSMUA_Achr8P18920_001	Banana	cytosol, mitochondrion	40.96	41.98
Bra009543.1-P	Field mustard	nucleus	41.57	39.2
Bra005738.1-P	Field mustard	cytosol	40.96	38.2
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	37.35	37.8
Os04t0520700-01	Rice	mitochondrion	37.35	35.63
TraesCS2D01G376300.1	Wheat	mitochondrion	37.35	35.03
Zm00001d003009_P001	Maize	mitochondrion, nucleus	38.55	34.78
TraesCS2B01G397000.1	Wheat	mitochondrion	36.75	34.27
TraesCS2A01G380100.1	Wheat	mitochondrion	36.75	34.27
HORVU1Hr1G041890.1	Barley	mitochondrion	36.75	34.08
HORVU0Hr1G005210.2	Barley	cytosol, plastid	36.14	33.9
Zm00001d025872_P001	Maize	mitochondrion	36.75	33.89
TraesCS1D01G155400.1	Wheat	mitochondrion	36.75	33.7
TraesCS1B01G174100.1	Wheat	mitochondrion	36.75	33.7
TraesCS1A01G157900.1	Wheat	mitochondrion	36.75	33.7
KXG26730	Sorghum	mitochondrion	37.95	32.98
Zm00001d014007_P001	Maize	cytosol, plastid	34.34	31.84
Bra029510.1-P	Field mustard	nucleus	28.31	31.54
Os02t0629000-01	Rice	mitochondrion	31.93	31.18
EER91475	Sorghum	mitochondrion	35.54	31.05
Bra019408.1-P	Field mustard	nucleus	28.92	30.57
Bra013577.1-P	Field mustard	nucleus	27.71	30.07
TraesCS6D01G212800.1	Wheat	cytosol	31.33	30.06
TraesCS6A01G222200.1	Wheat	cytosol	30.72	28.98
TraesCS6B01G258900.1	Wheat	nucleus	30.12	28.9
Zm00001d017287_P001	Maize	cytosol	29.52	28.82
HORVU0Hr1G016350.1	Barley	cytosol, mitochondrion, nucleus, plastid	30.72	28.65
Bra013574.1-P	Field mustard	cytosol	28.92	27.75
Bra027071.1-P	Field mustard	cytosol	30.72	25.76
Bra019080.1-P	Field mustard	nucleus	22.89	25.17
Bra019837.1-P	Field mustard	mitochondrion	30.72	24.88
Bra035703.1-P	Field mustard	cytosol	36.75	24.8
Bra027283.1-P	Field mustard	nucleus	31.33	24.19
Bra001580.1-P	Field mustard	nucleus	31.33	23.11
Bra021587.1-P	Field mustard	nucleus	28.31	21.36
Os10t0481000-00	Rice	mitochondrion	27.71	15.38

Protein Annotations

EnsemblPlants:Bra020237.1	EnsemblPlants:Bra020237.1-P	EnsemblPlantsGene:Bra020237	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF9
PFAM:PF04520	SEG:seg	UniParc:UPI0002543578	UniProt:M4DUP4	MapMan:35.2	:

Description

AT5G60680 (E=6e-051) | unknown protein

Coordinates

chrA02:-:5761866..5762366

Molecular Weight (calculated)

18389.2 Da

IEP (calculated)

8.458

GRAVY (calculated)

-0.855

Length

166 amino acids

Sequence
(BLAST)

001: MATGKSYYAR PSYRFLGTDQ SYFAATDSGL EFDESDLYSS AGSVHSASPR KKISASVRSG KKPSNRPSSC AGAAATSLPI NVPDWSKILR EEHRDNRRRR
101: IEDDDGESED GEEWLDGSGG RLPPHEFLAR TRMASFSVHE GVGRTLKGRD LSRVRNAIFE KIGFQD

Best Arabidopsis Sequence Match ( AT5G60680.1 )
(BLAST)

001: MATGKSYYAR PSYRFLGTDQ PSYFTASDSG LEFDESDLFN PIHSDSPDFC RKISSSVRSG KKSSNRPSAA SSAAAASSLP VNVPDWSKIL RGEYRDNRRR
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FF51]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.