Factsheet for TraesCS2D01G376300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1
TraesCS6A01G146200.3
TraesCS6A01G251400.1
TraesCS6A01G274500.1
TraesCS6B01G174400.1
TraesCS6B01G273900.1
TraesCS6B01G302000.1
TraesCS6D01G135500.3
TraesCS6D01G233200.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45210.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT3G45210.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT3G45210.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT3G45210.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT3G45210.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT3G45210.1	TraesCS6D01G233200.1	AT3G48150.1	21798944
AT5G03230.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3D01G231300.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS6A01G146200.3	AT4G31920.1	18642946
AT5G03230.1	TraesCS6B01G174400.1	AT4G31920.1	18642946
AT5G03230.1	TraesCS6D01G135500.3	AT4G31920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G397000.1	Wheat	mitochondrion	94.92	94.38
TraesCS2A01G380100.1	Wheat	mitochondrion	94.92	94.38
HORVU0Hr1G005210.2	Barley	cytosol, plastid	86.44	86.44
Os04t0520700-01	Rice	mitochondrion	76.27	77.59
Zm00001d003009_P001	Maize	mitochondrion, nucleus	73.45	70.65
KXG26730	Sorghum	mitochondrion	72.88	67.54
Zm00001d025872_P001	Maize	mitochondrion	66.1	65.0
TraesCS6D01G212800.1	Wheat	cytosol	53.11	54.34
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	47.46	51.22
KRH22888	Soybean	cytosol, mitochondrion, nucleus	37.85	43.51
Solyc06g075170.1.1	Tomato	nucleus	38.42	41.72
PGSC0003DMT400062500	Potato	nucleus	39.55	40.94
PGSC0003DMT400045373	Potato	cytosol	33.9	40.82
KRH26408	Soybean	cytosol	33.9	40.27
VIT_06s0004g02830.t01	Wine grape	cytosol	37.29	39.52
PGSC0003DMT400020798	Potato	plastid	36.72	38.24
KRH25013	Soybean	mitochondrion	36.72	38.24
Solyc11g069450.1.1	Tomato	cytosol	37.29	38.15
KRH29916	Soybean	mitochondrion	36.16	37.43
AT5G60680.1	Thale cress	nucleus	34.46	37.42
Bra020237.1-P	Field mustard	nucleus	35.03	37.35
AT3G45210.1	Thale cress	nucleus	31.07	37.16
CDY65979	Canola	nucleus	33.33	37.11
Bra002459.1-P	Field mustard	nucleus	33.33	36.88
VIT_08s0040g01860.t01	Wine grape	cytosol	33.9	36.59
AT5G03230.1	Thale cress	nucleus	33.9	36.14
CDY62461	Canola	nucleus	31.64	35.44
TraesCS1D01G155400.1	Wheat	mitochondrion	36.16	35.36
Solyc10g086110.1.1	Tomato	cytosol	31.07	34.81
Solyc09g007790.1.1	Tomato	cytosol	31.07	34.81
PGSC0003DMT400055482	Potato	cytosol	31.07	34.38
CDX77180	Canola	nucleus	31.64	33.94
AT2G28400.1	Thale cress	mitochondrion	30.51	33.33
KRH19865	Soybean	mitochondrion	33.9	33.33
KRG95986	Soybean	nucleus	28.25	32.89
KRH32477	Soybean	cytosol	33.9	31.91
KRH67690	Soybean	cytosol	29.38	31.33
CDX70321	Canola	nucleus	31.07	31.25
CDY10396	Canola	nucleus	31.07	31.25
Bra009543.1-P	Field mustard	nucleus	30.51	30.68
Bra005738.1-P	Field mustard	cytosol	30.51	30.34
CDX80857	Canola	cytosol	30.51	30.17
CDY11244	Canola	cytosol	29.94	29.78
TraesCS2D01G228500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.25	29.59
TraesCS5D01G134900.1	Wheat	cytosol	24.86	28.03
TraesCS2D01G387500.1	Wheat	cytosol, nucleus, plastid	28.81	25.25
TraesCS2D01G266500.1	Wheat	mitochondrion, nucleus	24.86	24.72
TraesCS3D01G367800.1	Wheat	nucleus	27.12	22.64
TraesCS2D01G293600.1	Wheat	nucleus	28.81	21.25
Bra035703.1-P	Field mustard	cytosol	29.38	21.14

Protein Annotations

EnsemblPlants:TraesCS2D01G376300.1	EnsemblPlantsGene:TraesCS2D01G376300	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF40	PFAM:PF04520
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:480573814..480575250

Molecular Weight (calculated)

18714.6 Da

IEP (calculated)

9.074

GRAVY (calculated)

-0.630

Length

177 amino acids

Sequence
(BLAST)

001: MAGSARSAAA KHAYRMFTPS RSAASRGSPG SAADEFDESD VWGSFGGADS GPADLARART IPSSARASGR KKPLDHAHAG PGAGAVPGSL PMSIPDWQKI
101: LGAEYRDHHA GEWELYDDDY GKVGSGCRSG SVVPPHELAW RSRAASLSVH EGVGRTLKGR DLSRVRDAVW KRTGFED

Best Arabidopsis Sequence Match ( AT5G60680.1 )
(BLAST)

001: MATGKSYYAR PSYRFLGTDQ PSYFTASDSG LEFDESDLFN PIHSDSPDFC RKISSSVRSG KKSSNRPSAA SSAAAASSLP VNVPDWSKIL RGEYRDNRRR
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FF51]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.