Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2B01G407800.1 | Wheat | nucleus | 97.03 | 97.51 |
TraesCS2A01G391200.1 | Wheat | nucleus | 96.04 | 96.52 |
HORVU2Hr1G092750.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 93.07 | 93.53 |
Zm00001d002798_P001 | Maize | mitochondrion | 70.3 | 67.94 |
Os04t0542000-01 | Rice | cytosol, nucleus, plastid | 69.31 | 66.99 |
EES11200 | Sorghum | mitochondrion | 68.81 | 64.35 |
Zm00001d025967_P001 | Maize | nucleus | 63.86 | 61.14 |
GSMUA_Achr11P... | Banana | cytosol | 22.28 | 40.54 |
TraesCS5D01G134900.1 | Wheat | cytosol | 30.2 | 38.85 |
TraesCS2D01G228500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 30.69 | 36.69 |
GSMUA_AchrUn_... | Banana | cytosol | 12.38 | 36.23 |
TraesCS3D01G367800.1 | Wheat | nucleus | 36.14 | 34.43 |
TraesCS1D01G155400.1 | Wheat | mitochondrion | 28.22 | 31.49 |
TraesCS2D01G266500.1 | Wheat | mitochondrion, nucleus | 27.23 | 30.9 |
TraesCS2D01G376300.1 | Wheat | mitochondrion | 25.25 | 28.81 |
GSMUA_Achr10P... | Banana | nucleus | 29.21 | 28.78 |
TraesCS2D01G293600.1 | Wheat | nucleus | 34.16 | 28.75 |
TraesCS6D01G212800.1 | Wheat | cytosol | 21.78 | 25.43 |
Protein Annotations
EnsemblPlants:TraesCS2D01G387500.1 | EnsemblPlantsGene:TraesCS2D01G387500 | InterPro:Senescence_reg_S40 | ncoils:Coil | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF8 |
PFAM:PF04520 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2D:+:492900447..492901055
Molecular Weight (calculated)
21754.0 Da
IEP (calculated)
5.374
GRAVY (calculated)
-0.705
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMRDRGAST VSPSLRFLGF IKQPDDAGAA DQELELDERD VVWSSSPSFS SASTASSPSP TPSPSGGSHR WPLSSRAFPS GGAGLSSLIA DEDNHSPSAA
101: IPAAARREKQ PRSQPYHQSA PVAVPAWSKA TADRRRREAE QEAADEEEEL EDDELMVPPH EMAARRAAAA ASVMEGAGRT LKGRDLRRMR NAVWRTTGFL
201: DL
101: IPAAARREKQ PRSQPYHQSA PVAVPAWSKA TADRRRREAE QEAADEEEEL EDDELMVPPH EMAARRAAAA ASVMEGAGRT LKGRDLRRMR NAVWRTTGFL
201: DL
001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
Arabidopsis Description
At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.