Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G407800.1 | Wheat | nucleus | 97.01 | 97.01 |
| TraesCS2D01G387500.1 | Wheat | cytosol, nucleus, plastid | 96.52 | 96.04 |
| HORVU2Hr1G092750.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 93.53 | 93.53 |
| Zm00001d002798_P001 | Maize | mitochondrion | 70.15 | 67.46 |
| Os04t0542000-01 | Rice | cytosol, nucleus, plastid | 69.65 | 66.99 |
| EES11200 | Sorghum | mitochondrion | 69.65 | 64.81 |
| Zm00001d025967_P001 | Maize | nucleus | 65.17 | 62.09 |
| GSMUA_Achr11P... | Banana | cytosol | 23.38 | 42.34 |
| TraesCS5A01G127300.1 | Wheat | cytosol | 30.85 | 39.49 |
| TraesCS5A01G539400.1 | Wheat | cytosol | 38.81 | 37.86 |
| TraesCS2A01G222500.1 | Wheat | cytosol | 31.34 | 37.28 |
| GSMUA_AchrUn_... | Banana | cytosol | 12.44 | 36.23 |
| TraesCS1A01G157900.1 | Wheat | mitochondrion | 29.35 | 32.6 |
| TraesCS2A01G256200.1 | Wheat | mitochondrion, nucleus | 28.36 | 31.32 |
| GSMUA_Achr10P... | Banana | nucleus | 30.85 | 30.24 |
| TraesCS2A01G295700.1 | Wheat | nucleus | 35.32 | 30.08 |
| TraesCS3A01G375300.1 | Wheat | mitochondrion, plastid | 35.82 | 29.27 |
| TraesCS2A01G380100.1 | Wheat | mitochondrion | 25.37 | 28.65 |
| TraesCS6A01G222200.1 | Wheat | cytosol | 22.89 | 26.14 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G391200.1 | EnsemblPlantsGene:TraesCS2A01G391200 | InterPro:Senescence_reg_S40 | ncoils:Coil | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF8 |
| PFAM:PF04520 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:640862120..640862725
Molecular Weight (calculated)
21715.0 Da
IEP (calculated)
6.293
GRAVY (calculated)
-0.731
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMRDRRASA VSPSLRFLGF IKQPDDAGAA DQELELDERD VVWSSSPSFS SASTASSPSP TPSPSGGSHR WPLSSRAFPS GGAGLSSLIA DEDSRSPSAA
101: IPAAARRERQ PRSQPYHQSA PVAVPAWSKA TADRRRREAE QEAADEEDEE DNELMVPPHE MAARRAAAAA SVMEGAGRTL KGRDLRRMRN AVWRTTGFLD
201: L
101: IPAAARRERQ PRSQPYHQSA PVAVPAWSKA TADRRRREAE QEAADEEDEE DNELMVPPHE MAARRAAAAA SVMEGAGRTL KGRDLRRMRN AVWRTTGFLD
201: L
001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
Arabidopsis Description
At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.