Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3D01G367800.1 | Wheat | nucleus | 83.74 | 97.17 |
TraesCS3B01G407500.1 | Wheat | nucleus | 81.3 | 93.02 |
HORVU3Hr1G083800.1 | Barley | nucleus | 79.67 | 91.16 |
EES01798 | Sorghum | mitochondrion, nucleus | 61.79 | 73.43 |
Os01t0862600-01 | Rice | nucleus | 65.04 | 73.06 |
Zm00001d042760_P001 | Maize | nucleus | 61.79 | 72.04 |
TraesCS5A01G127300.1 | Wheat | cytosol | 23.98 | 37.58 |
TraesCS2A01G391200.1 | Wheat | nucleus | 29.27 | 35.82 |
TraesCS2A01G295700.1 | Wheat | nucleus | 32.11 | 33.47 |
TraesCS1A01G157900.1 | Wheat | mitochondrion | 24.39 | 33.15 |
TraesCS5A01G539400.1 | Wheat | cytosol | 27.64 | 33.01 |
TraesCS2A01G380100.1 | Wheat | mitochondrion | 19.92 | 27.53 |
TraesCS2A01G222500.1 | Wheat | cytosol | 18.7 | 27.22 |
TraesCS2A01G256200.1 | Wheat | mitochondrion, nucleus | 19.51 | 26.37 |
TraesCS6A01G222200.1 | Wheat | cytosol | 17.89 | 25.0 |
Protein Annotations
EnsemblPlants:TraesCS3A01G375300.1 | EnsemblPlantsGene:TraesCS3A01G375300 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF42 | PFAM:PF04520 |
SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:624541499..624542239
Molecular Weight (calculated)
26488.7 Da
IEP (calculated)
11.301
GRAVY (calculated)
-0.518
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAPARIPPL LRCRIAASPP VTSAVNRESG ASRYTARARH KSSPSSERFL GAFLPRAAAA DQPASAAFEL DEDDLFGSGV GSPERPQPPP PRRPLFISSF
101: RAANPSPRLR RPPGGILEAL PERLGPLSPP PSASTSPASP ATALPRMIPA IPRPAPAPAM QMPQSAPVNV PVARMRRPPF EAFASEPDEE EDDEEMLPPH
201: EMVARSRARE SPMTTFSVLE GAGRTLKGRD LRQVRNAVWR KTGLLD
101: RAANPSPRLR RPPGGILEAL PERLGPLSPP PSASTSPASP ATALPRMIPA IPRPAPAPAM QMPQSAPVNV PVARMRRPPF EAFASEPDEE EDDEEMLPPH
201: EMVARSRARE SPMTTFSVLE GAGRTLKGRD LRQVRNAVWR KTGLLD
001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
Arabidopsis Description
At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.