Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES01798 | Sorghum | mitochondrion, nucleus | 74.43 | 78.74 |
| Zm00001d042760_P001 | Maize | nucleus | 75.34 | 78.2 |
| HORVU3Hr1G083800.1 | Barley | nucleus | 75.34 | 76.74 |
| TraesCS3D01G367800.1 | Wheat | nucleus | 73.97 | 76.42 |
| TraesCS3B01G407500.1 | Wheat | nucleus | 74.43 | 75.81 |
| TraesCS3A01G375300.1 | Wheat | mitochondrion, plastid | 73.06 | 65.04 |
| Os04t0413900-01 | Rice | nucleus | 42.47 | 37.96 |
| Os11t0154300-01 | Rice | cytosol, mitochondrion, plastid | 29.22 | 37.43 |
| Os04t0542000-01 | Rice | cytosol, nucleus, plastid | 33.79 | 35.41 |
| Os03t0113900-02 | Rice | cytosol, mitochondrion, plastid | 30.59 | 34.01 |
| Os04t0520700-01 | Rice | mitochondrion | 24.66 | 31.03 |
| Os02t0629000-01 | Rice | mitochondrion | 23.74 | 30.59 |
| Os07t0516300-01 | Rice | mitochondrion | 21.46 | 23.98 |
| Os12t0156000-00 | Rice | nucleus | 23.74 | 18.44 |
| Os10t0481000-00 | Rice | mitochondrion | 23.29 | 17.06 |
Protein Annotations
| EMBL:AK108344 | EnsemblPlants:Os01t0862600-01 | EnsemblPlantsGene:Os01g0862600 | EntrezGene:4324748 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 |
| PANTHER:PTHR33083:SF42 | PFAM:PF04520 | ProteinID:BAD82590.1 | ProteinID:BAF06798.1 | ProteinID:BAS75351.1 | RefSeq:XP_015620569.1 |
| SEG:seg | UniParc:UPI000049EAB7 | UniProt:Q5N7G7 | MapMan:35.2 | : | : |
Description
Protein of unknown function DUF584 family protein. (Os01t0862600-01)
Coordinates
chr1:+:37323898..37324874
Molecular Weight (calculated)
23493.6 Da
IEP (calculated)
7.811
GRAVY (calculated)
-0.565
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRSRHKNSP SSERFLGSFL PSAAAGDQPG SAAFELDEDD LFASGAGSPE RPQPSRRPLI LSAVRAANPS PLPRLRRPPE GILDALPERR SPFSPPPSSS
101: SNSSTTASPA AAAAAPPRLI PTIPRPAAAL APHIPQSAPV NVPVAQFRRL SVEALMDKAE DDDDDDEEML PPHEMVARAR ARDSPMTTFS VLEGAGRTLK
201: GRDLRQVRNA VWRKTGFLD
101: SNSSTTASPA AAAAAPPRLI PTIPRPAAAL APHIPQSAPV NVPVAQFRRL SVEALMDKAE DDDDDDEEML PPHEMVARAR ARDSPMTTFS VLEGAGRTLK
201: GRDLRQVRNA VWRKTGFLD
001: MNKNPRLDFS SPSSLATISD SADGELNEDD IFAIDISHAP PQARHSPVSS PAKQQTPARQ LQRSKSGLKN VEASGILAAL PESSGSSSYL SHVFHHKPAA
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
101: ALSTSVSSTA SSSSSSGGGA SAGSSSSARA IPTAPKPPQE RLPFSASFVG GGKYPQSAPV QVPLVSSAMM NRHKKEFKLT DVVDDDEEEE EGEMLPPHEI
201: VARSLAQSSL LSCSVLEGAG RTLKGRDLRQ VRNAVFRRTG FID
Arabidopsis Description
At3g15040 [Source:UniProtKB/TrEMBL;Acc:Q9LKA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.