Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 1
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002798_P001 | Maize | mitochondrion | 71.77 | 71.77 |
| HORVU2Hr1G092750.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 68.42 | 71.14 |
| TraesCS2B01G407800.1 | Wheat | nucleus | 67.46 | 70.15 |
| EES11200 | Sorghum | mitochondrion | 72.25 | 69.91 |
| TraesCS2A01G391200.1 | Wheat | nucleus | 66.99 | 69.65 |
| TraesCS2D01G387500.1 | Wheat | cytosol, nucleus, plastid | 66.99 | 69.31 |
| Zm00001d025967_P001 | Maize | nucleus | 68.42 | 67.77 |
| Os03t0113900-02 | Rice | cytosol, mitochondrion, plastid | 41.63 | 44.16 |
| GSMUA_Achr11P... | Banana | cytosol | 23.45 | 44.14 |
| GSMUA_AchrUn_... | Banana | cytosol | 13.4 | 40.58 |
| Os11t0154300-01 | Rice | cytosol, mitochondrion, plastid | 30.14 | 36.84 |
| Os01t0862600-01 | Rice | nucleus | 35.41 | 33.79 |
| GSMUA_Achr10P... | Banana | nucleus | 32.54 | 33.17 |
| Os04t0413900-01 | Rice | nucleus | 37.32 | 31.84 |
| Os04t0520700-01 | Rice | mitochondrion | 26.32 | 31.61 |
| Os07t0516300-01 | Rice | mitochondrion | 29.19 | 31.12 |
| Os02t0629000-01 | Rice | mitochondrion | 24.4 | 30.0 |
| Os12t0156000-00 | Rice | nucleus | 27.27 | 20.21 |
| Os10t0481000-00 | Rice | mitochondrion | 22.01 | 15.38 |
Protein Annotations
| EMBL:AK106878 | EnsemblPlants:Os04t0542000-01 | EnsemblPlantsGene:Os04g0542000 | EntrezGene:9272389 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 |
| PANTHER:PTHR33083:SF8 | PFAM:PF04520 | ProteinID:BAS90301.1 | ProteinID:CAD41269.1 | RefSeq:XP_015633434.1 | SEG:seg |
| UniParc:UPI00001B181B | UniProt:Q7XUJ4 | MapMan:35.2 | : | : | : |
Description
Protein of unknown function DUF584 family protein. (Os04t0542000-01)
Coordinates
chr4:+:27137079..27144180
Molecular Weight (calculated)
22247.6 Da
IEP (calculated)
6.809
GRAVY (calculated)
-0.674
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKPDRRSGA ATSPSLRFLG LLKQPDDGSG DHELELDERD VVWSSSSSSN TSPSSWASST NSSPSLTPSA SAGVGVRRPL SSSHAFPAAG SVGLSALLAD
101: DHAPTASIPA KARPERQQPP QPYHQSAPVA VPAWPKATDS DRRRRGVQHE ALNDEEDDDD ELVVPPHEMA ARRAAAAASV MEGAGRTLKG RDLRRVRNAV
201: WRTTGFLDL
101: DHAPTASIPA KARPERQQPP QPYHQSAPVA VPAWPKATDS DRRRRGVQHE ALNDEEDDDD ELVVPPHEMA ARRAAAAASV MEGAGRTLKG RDLRRVRNAV
201: WRTTGFLDL
001: MATSKCYYPR PSHRFFTTDQ HVTATSDFEL DEWDLFNTGS DSSSSFSFSD LTITSGRTGT NRQIHGGSDS GKAASSLPVN VPDWSKILGD ESRRQRKISN
101: EEEVDGDEIL CGEGTRRVPP HELLANRRMA SFSVHEGAGR TLKGRDLSRV RNTIFKIRGI ED
101: EEEVDGDEIL CGEGTRRVPP HELLANRRMA SFSVHEGAGR TLKGRDLSRV RNTIFKIRGI ED
Arabidopsis Description
Uncharacterized protein At2g28400 [Source:UniProtKB/TrEMBL;Acc:Q9SKN0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.