Factsheet for TraesCS6B01G174400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G157900.1
TraesCS1B01G174100.1
TraesCS1D01G155400.1
TraesCS2A01G380100.1
TraesCS2B01G397000.1
TraesCS2D01G376300.1
TraesCS3A01G214100.1
TraesCS3A01G287800.1
TraesCS3B01G244800.1
TraesCS3B01G322500.1
TraesCS3D01G216700.1
TraesCS3D01G287600.1
TraesCS6A01G222200.1
TraesCS6B01G258900.1
TraesCS6D01G212800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31920.1	TraesCS3A01G214100.1	AT1G01300.1	18642946
AT4G31920.1	TraesCS3A01G287800.1	AT1G01300.1	18642946
AT4G31920.1	TraesCS3B01G244800.1	AT1G01300.1	18642946
AT4G31920.1	TraesCS3B01G322500.1	AT1G01300.1	18642946
AT4G31920.1	TraesCS3D01G216700.1	AT1G01300.1	18642946
AT4G31920.1	TraesCS3D01G287600.1	AT1G01300.1	18642946
AT4G31920.1	TraesCS1A01G157900.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS1B01G174100.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS1D01G155400.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS2A01G380100.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS2B01G397000.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS2D01G376300.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS6A01G222200.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS6B01G258900.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS6D01G212800.1	AT5G03230.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G028680.1	Barley	nucleus	96.78	96.63
TraesCS6D01G135500.3	Wheat	nucleus	96.78	93.33
TraesCS6A01G146200.3	Wheat	nucleus	95.66	92.97
Os02t0182100-01	Rice	nucleus	77.01	76.52
EES06387	Sorghum	nucleus	74.6	73.53
Zm00001d015521_P001	Maize	nucleus	73.31	72.27
TraesCS7B01G408600.1	Wheat	cytosol	13.5	61.76
TraesCS7B01G421000.1	Wheat	cytosol	9.32	54.21
TraesCS7B01G420800.1	Wheat	cytosol	9.0	52.34
TraesCS7B01G461400.1	Wheat	nucleus	21.06	51.78
GSMUA_Achr3P13400_001	Banana	nucleus	39.55	39.17
CDX87845	Canola	cytosol, extracellular	8.36	38.81
Solyc07g005140.2.1	Tomato	nucleus	40.35	37.74
CDY70103	Canola	nucleus	34.73	37.44
CDX68803	Canola	nucleus	30.71	37.38
CDY35371	Canola	nucleus	34.89	37.35
Bra032035.1-P	Field mustard	nucleus	34.89	37.35
AT4G31920.1	Thale cress	nucleus	33.12	37.32
CDY13465	Canola	nucleus	30.71	36.87
CDX72337	Canola	nucleus	30.87	36.71
Bra023972.1-P	Field mustard	nucleus	30.55	36.68
AT2G25180.1	Thale cress	nucleus	35.05	36.58
TraesCS6B01G392000.1	Wheat	nucleus	38.59	35.61
PGSC0003DMT400020233	Potato	nucleus	40.19	35.36
Solyc12g010330.1.1	Tomato	nucleus	39.55	34.75
TraesCS7B01G049000.1	Wheat	nucleus	33.92	33.81
TraesCS7B01G049200.1	Wheat	nucleus	34.73	32.88
PGSC0003DMT400008290	Potato	nucleus	40.19	32.34
TraesCS7B01G420900.1	Wheat	nucleus	25.56	32.12
TraesCS3B01G517000.1	Wheat	nucleus	29.26	31.87
TraesCS7B01G422000.1	Wheat	nucleus	28.78	31.79
TraesCS7B01G422100.1	Wheat	nucleus	27.81	30.3
TraesCS7B01G408700.1	Wheat	nucleus	30.55	30.16
TraesCS3B01G423600.1	Wheat	nucleus	26.85	28.6
TraesCS4B01G240100.1	Wheat	nucleus	30.23	27.49
CDY49965	Canola	mitochondrion	13.83	25.52
TraesCS3B01G394200.1	Wheat	nucleus, plastid	9.0	24.89
TraesCS3B01G594300.1	Wheat	nucleus	10.13	21.95
TraesCS1B01G268900.1	Wheat	nucleus	10.29	20.78
TraesCS7B01G461300.1	Wheat	nucleus, plastid	5.95	11.18

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072
PFAM:PF00249	PIRSF:PIRSF036392	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF7
InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver
TIGRFAMs:TIGR01557	EnsemblPlantsGene:TraesCS6B01G174400	EnsemblPlants:TraesCS6B01G174400.1	TIGR:cd00156	SEG:seg	:

Description

No Description!

Coordinates

chr6B:+:189097492..189101988

Molecular Weight (calculated)

67353.6 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.624

Length

622 amino acids

Sequence
(BLAST)

001: MTVEGRVSGG GDGGGKDKFP VGMRVLAVDD DPTCLKVLEN LLRRCDYHVT TTGQAATALR MLRENKDQFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM
101: LSANGETQTV MKGITHGACD YLLKPVRLEQ LKTIWQHVIR RNTKNRGSDN DDAGQKGPNA EGENGGANRN KRQSRRDRDE NGDDGDDSDE NSNDNGDSSS
201: QKKPRVVWSV ELHRKFVAAV NQLGIDKAVP KKILDLMNVE NITRENVASH LQKYRLYLKR MSMDASRQAN LVAALGGRNP AYSNMNSMDV FRHYSNTYGR
301: YRPVPTSNHS QSNNLVARMN SPSAYGMHGL LSPQSQPLHL GHAQNNLGTS LNDLGVNNGN LIRGAQMSTM VTGTSGNSFA NISNGAPLAP TNRAVQSLES
401: NNRQHLGRIN SSSTDSFSSF ASDSPHFPDL GRSSNTWQTA VPSNIQQLGQ NGSMSQASLH GNGPRMEPVS SYAPPSNQIT SLGNDMQNQV APLASNSLPM
501: VFNQGAAPFT FGNSTNSREA LNSNLAFSNS GINTSLPNLR IDNSVVPRQT LDGGNTGGVP SLQDGKIDQQ AVGNQLNYNN NDLVGTSGLQ RELSGGLDDI
601: VVDMFRPDND NGGIFDTDWG LV

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.