Factsheet for TraesCS3B01G394200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G355500.1	Wheat	nucleus, plastid	96.89	96.04
TraesCS3A01G361800.1	Wheat	nucleus, plastid	92.44	92.44
HORVU3Hr1G086000.1	Barley	nucleus	90.22	89.04
Os01t0844900-01	Rice	nucleus	53.78	55.25
KXG33682	Sorghum	mitochondrion, nucleus	56.44	46.35
Zm00001d042892_P001	Maize	nucleus	50.67	37.5
TraesCS3B01G594300.1	Wheat	nucleus	36.44	28.57
TraesCS1B01G268900.1	Wheat	nucleus	34.67	25.32
TraesCS7B01G461400.1	Wheat	nucleus	16.44	14.62
TraesCS4B01G240100.1	Wheat	nucleus	28.0	9.21
TraesCS6B01G174400.1	Wheat	nucleus	24.89	9.0
TraesCS7B01G049000.1	Wheat	nucleus	24.89	8.97
TraesCS3B01G423600.1	Wheat	nucleus	23.11	8.9
TraesCS6B01G392000.1	Wheat	nucleus	26.67	8.9
TraesCS7B01G049200.1	Wheat	nucleus	25.33	8.68
TraesCS7B01G420900.1	Wheat	nucleus	18.67	8.48
TraesCS7B01G422000.1	Wheat	nucleus	20.89	8.35
TraesCS3B01G517000.1	Wheat	nucleus	20.89	8.23
TraesCS7B01G422100.1	Wheat	nucleus	20.0	7.88
TraesCS7B01G408700.1	Wheat	nucleus	21.33	7.62
TraesCS7B01G421000.1	Wheat	cytosol	1.78	3.74
TraesCS7B01G408600.1	Wheat	cytosol	2.22	3.68
TraesCS7B01G420800.1	Wheat	cytosol	1.33	2.8
TraesCS7B01G461300.1	Wheat	nucleus, plastid	1.78	1.21

Protein Annotations

EnsemblPlants:TraesCS3B01G394200.1	EnsemblPlantsGene:TraesCS3B01G394200	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	InterPro:SANT/Myb
PANTHER:PTHR31442	PFAM:PF00249	PFscan:PS51294	SEG:seg	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:621297176..621297853

Molecular Weight (calculated)

24312.3 Da

IEP (calculated)

6.235

GRAVY (calculated)

-0.566

Length

225 amino acids

Sequence
(BLAST)

001: MLSPRVVRPQ PHDGTASAGS SSSRRHMVDR VSEWELGLPS AAELTPVSQA LIPPALAAAF GIGPADALSS PVDTGFLHDS PTSHLTSRFD EYDEEDEEEG
101: EGETDDAAAG ARRGGGGGKK ARMVWTPELH HRFVEAVEHL GEKGAVPKAI VRLMNVDGLT RENVASHLQK YRLYLKRSSP GAAAPSPPPP PFFPRFDVQR
201: PHQDSANRSG YCAYPYVSYQ KLGCD

Best Arabidopsis Sequence Match ( AT3G46640.1 )
(BLAST)

001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN

Arabidopsis Description

PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.