Factsheet for HORVU3Hr1G086000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G361800.1	Wheat	nucleus, plastid	90.35	91.56
TraesCS3D01G355500.1	Wheat	nucleus, plastid	90.79	91.19
TraesCS3B01G394200.1	Wheat	nucleus, plastid	89.04	90.22
Os01t0844900-01	Rice	nucleus	54.82	57.08
KXG33682	Sorghum	mitochondrion, nucleus	54.82	45.62
Zm00001d042892_P001	Maize	nucleus	49.56	37.17
HORVU3Hr1G114970.1	Barley	nucleus	35.96	29.93
HORVU1Hr1G064950.1	Barley	nucleus	34.65	25.9
HORVU7Hr1G030050.1	Barley	nucleus	25.44	9.27
HORVU4Hr1G066480.1	Barley	nucleus	27.19	9.06
HORVU6Hr1G028680.1	Barley	nucleus	24.56	8.99
HORVU7Hr1G114130.2	Barley	nucleus	19.3	8.98
HORVU6Hr1G085560.5	Barley	nucleus	25.88	8.61
HORVU7Hr1G114450.2	Barley	nucleus	20.61	7.9
HORVU7Hr1G030000.4	Barley	nucleus	25.0	7.67
HORVU7Hr1G112830.1	Barley	cytosol, nucleus	5.7	7.65
HORVU7Hr1G118290.2	Barley	nucleus	19.74	7.46
HORVU7Hr1G112840.1	Barley	nucleus	18.86	6.58
HORVU7Hr1G112890.1	Barley	nucleus	19.3	6.52
HORVU7Hr1G112860.2	Barley	cytosol	3.95	4.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	UniProt:A0A287M2J0	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:HORVU3Hr1G086000	EnsemblPlants:HORVU3Hr1G086000.1	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31442	PANTHER:PTHR31442:SF10	InterPro:SANT/Myb	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI000B474A9A	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:615106969..615108753

Molecular Weight (calculated)

24681.9 Da

IEP (calculated)

6.310

GRAVY (calculated)

-0.596

Length

228 amino acids

Sequence
(BLAST)

001: MLSPRVVRPQ PHDGAASAGS SSSRRHMVDR VPEWELGLPS PAELTPVSQP LIPPALAAAF GIGPADAPVD AGFLHDSPTS HLPPRFDEYD EEDEEEEGEG
101: ETDDPAAAAA SAAGGRRGGF GKKARMVWTP ELHHRFVEAV EHLGEKGAVP KAIVRLMNVD GLTRENVASH LQKYRLYLKR STPAAAAPSP PPPPYFPRFD
201: VQRPRQQSAN RGGYCGYPYV SYQKLGCD

Best Arabidopsis Sequence Match ( AT5G59570.1 )
(BLAST)

001: MGKEVMVSDY GDDDGEDAGG GDEYRIPEWE IGLPNGDDLT PLSQYLVPSI LALAFSMIPE RSRTIHDVNR ASQITLSSLR SSTNASSVME EVVDRVESSV
101: PGSDPKKQKK SDGGEAAAVE DSTAEEGDSG PEDASGKTSK RPRLVWTPQL HKRFVDVVAH LGIKNAVPKT IMQLMNVEGL TRENVASHLQ KYRLYLKRIQ
201: GLTTEEDPYS SSDQLFSSTP VPPQSFQDGG GSNGKLGVPV PVPSMVPIPG YGNQMGMQGY YQQYSNHGNE SNQYMMQQNK FGTMVTYPSV GGGDVNDK

Arabidopsis Description

BOATranscription factor BOA [Source:UniProtKB/Swiss-Prot;Acc:Q9LTH4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.