Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G526600.1 | Wheat | nucleus | 94.16 | 90.53 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 94.53 | 90.24 |
| TraesCS3D01G531900.1 | Wheat | nucleus | 91.24 | 88.97 |
| Os01t0971800-00 | Rice | nucleus | 60.22 | 69.33 |
| Zm00001d011785_P001 | Maize | nucleus | 49.63 | 62.1 |
| Zm00001d041960_P001 | Maize | nucleus | 56.57 | 60.08 |
| GSMUA_Achr5P07060_001 | Banana | nucleus | 44.89 | 53.71 |
| GSMUA_Achr10P... | Banana | nucleus | 49.63 | 48.75 |
| Solyc06g005680.2.1 | Tomato | nucleus | 47.08 | 48.5 |
| CDX68392 | Canola | nucleus | 45.26 | 47.33 |
| CDX82988 | Canola | nucleus | 44.16 | 46.72 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 52.55 | 46.3 |
| CDY61256 | Canola | nucleus | 45.26 | 45.26 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.0 | 44.92 |
| PGSC0003DMT400005490 | Potato | nucleus | 48.54 | 44.04 |
| Bra033809.1-P | Field mustard | nucleus | 45.62 | 43.86 |
| KRH24748 | Soybean | nucleus | 48.18 | 43.14 |
| CDX99104 | Canola | nucleus | 44.89 | 42.41 |
| KRH76596 | Soybean | mitochondrion | 18.61 | 42.15 |
| KRH29751 | Soybean | nucleus | 49.27 | 41.8 |
| Bra018204.1-P | Field mustard | nucleus | 45.26 | 40.79 |
| AT5G59570.2 | Thale cress | nucleus | 43.8 | 40.27 |
| PGSC0003DMT400077979 | Potato | nucleus | 45.26 | 39.49 |
| Solyc06g076350.2.1 | Tomato | nucleus | 44.16 | 37.58 |
| AT3G46640.3 | Thale cress | nucleus | 43.8 | 37.04 |
| HORVU3Hr1G086000.1 | Barley | nucleus | 29.93 | 35.96 |
| HORVU1Hr1G064950.1 | Barley | nucleus | 35.77 | 32.13 |
| HORVU6Hr1G028680.1 | Barley | nucleus | 22.63 | 9.95 |
| HORVU4Hr1G066480.1 | Barley | nucleus | 24.82 | 9.94 |
| HORVU7Hr1G114130.2 | Barley | nucleus | 17.52 | 9.8 |
| HORVU7Hr1G030050.1 | Barley | nucleus | 21.9 | 9.58 |
| HORVU6Hr1G085560.5 | Barley | nucleus | 22.99 | 9.2 |
| HORVU7Hr1G112830.1 | Barley | cytosol, nucleus | 5.47 | 8.82 |
| HORVU7Hr1G030000.4 | Barley | nucleus | 22.63 | 8.34 |
| HORVU7Hr1G114450.2 | Barley | nucleus | 17.88 | 8.24 |
| HORVU7Hr1G118290.2 | Barley | nucleus | 16.79 | 7.63 |
| HORVU7Hr1G112840.1 | Barley | nucleus | 15.33 | 6.43 |
| HORVU7Hr1G112890.1 | Barley | nucleus | 15.69 | 6.37 |
| HORVU7Hr1G112860.2 | Barley | cytosol | 4.01 | 5.24 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:27.1.6.3.1 | EMBL:AK357505 | UniProt:F2D0U8 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009909 | GO:GO:0009987 | EnsemblPlantsGene:HORVU3Hr1G114970 | EnsemblPlants:HORVU3Hr1G114970.1 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 | InterPro:SANT/Myb |
| SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI000200506A | SEG:seg | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D0U8]
Coordinates
chrchr3H:-:692190558..692192500
Molecular Weight (calculated)
28843.6 Da
IEP (calculated)
7.974
GRAVY (calculated)
-0.464
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEAGGYGF DFGGYGGYEG RVTEWETGLP GCDELTPLSQ PLVPPGLAAA FRIPPEPGRT LLDVHRASSA TVSRLRSASS SPSSGNAPAT GGSFPSFPGK
101: SSAAGDDNNN NSSAESAGEK SAAAATKRAR LVWTPQLHKR FVEVVAHLGI KSAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYVKRMQGLS NEGPSASDHI
201: FASTPVPHSL REPQVPVPHA AAMAPAMYHH HPAPMGGVAA GHGGYYQQQH SAHAVYNGYG GGVSSYPHYH HGDQ
101: SSAAGDDNNN NSSAESAGEK SAAAATKRAR LVWTPQLHKR FVEVVAHLGI KSAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYVKRMQGLS NEGPSASDHI
201: FASTPVPHSL REPQVPVPHA AAMAPAMYHH HPAPMGGVAA GHGGYYQQQH SAHAVYNGYG GGVSSYPHYH HGDQ
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
Arabidopsis Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.