Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82988 | Canola | nucleus | 88.93 | 89.96 |
| CDY61256 | Canola | nucleus | 81.3 | 77.74 |
| CDX99104 | Canola | nucleus | 85.11 | 76.9 |
| AT3G46640.3 | Thale cress | nucleus | 81.3 | 65.74 |
| GSMUA_Achr5P07060_001 | Banana | nucleus | 44.66 | 51.09 |
| Os01t0971800-00 | Rice | nucleus | 46.18 | 50.84 |
| Solyc06g005680.2.1 | Tomato | nucleus | 48.85 | 48.12 |
| Zm00001d011785_P001 | Maize | nucleus | 39.31 | 47.03 |
| PGSC0003DMT400005490 | Potato | nucleus | 53.82 | 46.69 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 47.33 | 45.26 |
| GSMUA_Achr10P... | Banana | nucleus | 47.33 | 44.44 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 52.67 | 44.37 |
| Zm00001d041960_P001 | Maize | nucleus | 43.51 | 44.19 |
| KRH24748 | Soybean | nucleus | 51.15 | 43.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.38 | 43.28 |
| TraesCS3A01G526600.1 | Wheat | nucleus | 46.95 | 43.16 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 46.95 | 42.86 |
| TraesCS3D01G531900.1 | Wheat | nucleus | 45.8 | 42.7 |
| KRH29751 | Soybean | nucleus | 51.91 | 42.11 |
| CDX73905 | Canola | nucleus | 16.03 | 42.0 |
| PGSC0003DMT400077979 | Potato | nucleus | 48.47 | 40.45 |
| Solyc06g076350.2.1 | Tomato | nucleus | 48.09 | 39.13 |
| CDX79963 | Canola | nucleus | 34.73 | 36.84 |
| CDY53674 | Canola | nucleus | 33.97 | 35.89 |
| CDX80940 | Canola | nucleus | 33.21 | 35.66 |
| CDX98816 | Canola | nucleus | 35.11 | 35.25 |
| CDY52133 | Canola | nucleus | 33.21 | 34.8 |
| CDY08579 | Canola | nucleus | 32.06 | 34.71 |
| CDY00969 | Canola | nucleus | 36.64 | 33.8 |
| CDX73907 | Canola | nucleus | 16.41 | 31.85 |
| CDY36273 | Canola | mitochondrion | 26.72 | 29.29 |
| CDY52720 | Canola | nucleus | 15.27 | 21.39 |
| CDY56439 | Canola | nucleus | 15.65 | 14.91 |
| CDY64566 | Canola | nucleus | 21.37 | 14.89 |
| CDX86245 | Canola | nucleus | 15.27 | 14.65 |
| CDY09419 | Canola | nucleus | 20.99 | 14.59 |
| CDY68249 | Canola | nucleus | 21.37 | 12.81 |
| CDY33920 | Canola | nucleus | 19.85 | 12.01 |
| CDX76652 | Canola | nucleus | 18.7 | 11.69 |
| CDY05641 | Canola | nucleus | 19.47 | 11.44 |
| CDY11437 | Canola | nucleus | 18.32 | 11.43 |
| CDX75892 | Canola | nucleus | 19.47 | 11.28 |
| CDY02794 | Canola | nucleus | 20.23 | 11.11 |
| CDX92102 | Canola | nucleus | 20.23 | 10.56 |
| CDX95898 | Canola | nucleus | 20.23 | 10.49 |
| CDY16482 | Canola | nucleus | 17.56 | 10.45 |
| CDY70103 | Canola | nucleus | 22.52 | 10.23 |
| CDX77263 | Canola | nucleus | 17.18 | 10.0 |
| CDY35371 | Canola | nucleus | 22.14 | 9.98 |
| CDX68803 | Canola | nucleus | 19.47 | 9.98 |
| CDY32209 | Canola | nucleus | 17.94 | 9.96 |
| CDY29358 | Canola | nucleus | 19.08 | 9.9 |
| CDY34423 | Canola | nucleus | 17.56 | 9.68 |
| CDX90546 | Canola | nucleus | 21.76 | 9.66 |
| CDY04335 | Canola | nucleus | 19.08 | 9.47 |
| CDX72337 | Canola | nucleus | 18.7 | 9.37 |
| CDY01838 | Canola | nucleus | 17.56 | 9.2 |
| CDY09718 | Canola | nucleus | 20.99 | 9.15 |
| CDY13465 | Canola | nucleus | 17.94 | 9.07 |
| CDY28869 | Canola | nucleus | 17.56 | 9.07 |
| CDY07410 | Canola | nucleus | 17.56 | 9.04 |
| CDX96070 | Canola | nucleus | 17.56 | 8.97 |
| CDX82389 | Canola | nucleus | 20.61 | 8.87 |
| CDY02793 | Canola | nucleus | 20.61 | 8.63 |
| CDY32725 | Canola | nucleus | 20.23 | 8.51 |
| CDY67763 | Canola | nucleus | 18.7 | 8.25 |
| CDX98997 | Canola | nucleus | 18.32 | 8.01 |
| CDX70016 | Canola | nucleus | 18.32 | 8.0 |
| CDX78284 | Canola | nucleus | 16.79 | 7.75 |
| CDX81041 | Canola | nucleus | 16.41 | 7.6 |
| CDY14053 | Canola | nucleus | 18.32 | 6.42 |
| CDX86925 | Canola | nucleus | 15.27 | 5.91 |
| CDY30695 | Canola | nucleus | 16.41 | 5.71 |
| CDX87845 | Canola | cytosol, extracellular | 2.29 | 4.48 |
| CDY54630 | Canola | cytosol | 2.29 | 3.87 |
| CDX82391 | Canola | cytosol | 1.91 | 3.38 |
| CDY54632 | Canola | cytosol | 1.91 | 3.38 |
| CDY49965 | Canola | mitochondrion | 3.44 | 2.67 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:27.1.6.3.1 | GO:A0A078BW27 | EnsemblPlants:CDX68392 | ProteinID:CDX68392 | ProteinID:CDX68392.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00125771001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 |
| PANTHER:PTHR31442:SF12 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE1C42 | SEG:seg |
Description
BnaC01g24700D
Coordinates
chrLK031788:+:700977..702744
Molecular Weight (calculated)
28784.8 Da
IEP (calculated)
6.977
GRAVY (calculated)
-0.690
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEVRMKDV SGDGDRVMEW EKGLPSDEDL ASLSYSLVPW NLAMAFSITP EKSRTIQDVN RASETTFSSL RGGSSGPNTS SSTNLGKQKI SEDAAGVEIS
101: TAEEGDSGTE DLKLKRARLV WTPQLHKRFV DVVAHLGIKN AVPKTIMQLM NVEGLTRENV ASHLQKYRLY LKRMQGLTSE GPSSSDKLFS STPVPPQSFQ
201: DLVYAHHMGM QGYHHQNHAH DPYHQNHHRG SGGPANPYMM QQNKFGSMAS YPPVGGGSAN EN
101: TAEEGDSGTE DLKLKRARLV WTPQLHKRFV DVVAHLGIKN AVPKTIMQLM NVEGLTRENV ASHLQKYRLY LKRMQGLTSE GPSSSDKLFS STPVPPQSFQ
201: DLVYAHHMGM QGYHHQNHAH DPYHQNHHRG SGGPANPYMM QQNKFGSMAS YPPVGGGSAN EN
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
Arabidopsis Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.