Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79963 | Canola | nucleus | 95.56 | 95.95 |
| AT2G40970.1 | Thale cress | nucleus | 82.66 | 82.66 |
| CDX80940 | Canola | nucleus | 50.0 | 50.82 |
| CDY52133 | Canola | nucleus | 50.81 | 50.4 |
| CDX98816 | Canola | nucleus | 52.42 | 49.81 |
| CDY00969 | Canola | nucleus | 56.85 | 49.65 |
| KRH71692 | Soybean | nucleus | 51.21 | 48.85 |
| VIT_08s0040g00900.t01 | Wine grape | nucleus | 60.08 | 48.69 |
| CDY08579 | Canola | nucleus | 47.18 | 48.35 |
| KRG95053 | Soybean | nucleus | 58.06 | 46.15 |
| CDX73905 | Canola | nucleus | 18.15 | 45.0 |
| CDY36273 | Canola | mitochondrion | 39.92 | 41.42 |
| CDX73907 | Canola | nucleus | 19.76 | 36.3 |
| CDY61256 | Canola | nucleus | 38.31 | 34.67 |
| CDX68392 | Canola | nucleus | 35.89 | 33.97 |
| CDX82988 | Canola | nucleus | 35.08 | 33.59 |
| CDX99104 | Canola | nucleus | 39.11 | 33.45 |
| CDY52720 | Canola | nucleus | 16.53 | 21.93 |
| CDY09419 | Canola | nucleus | 21.77 | 14.32 |
| CDX86245 | Canola | nucleus | 15.73 | 14.29 |
| CDY56439 | Canola | nucleus | 15.73 | 14.18 |
| CDY64566 | Canola | nucleus | 21.37 | 14.1 |
| CDX75892 | Canola | nucleus | 22.58 | 12.39 |
| CDY02794 | Canola | nucleus | 23.39 | 12.16 |
| CDY68249 | Canola | nucleus | 21.37 | 12.13 |
| CDX92102 | Canola | nucleus | 22.98 | 11.35 |
| CDX95898 | Canola | nucleus | 22.98 | 11.29 |
| CDY11437 | Canola | nucleus | 18.55 | 10.95 |
| CDY33920 | Canola | nucleus | 18.95 | 10.85 |
| CDX76652 | Canola | nucleus | 18.15 | 10.74 |
| CDY01838 | Canola | nucleus | 21.37 | 10.6 |
| CDY32209 | Canola | nucleus | 19.76 | 10.38 |
| CDY35371 | Canola | nucleus | 24.19 | 10.33 |
| CDY34423 | Canola | nucleus | 19.76 | 10.32 |
| CDY05641 | Canola | nucleus | 18.55 | 10.31 |
| CDY28869 | Canola | nucleus | 20.97 | 10.26 |
| CDY70103 | Canola | nucleus | 23.79 | 10.23 |
| CDY07410 | Canola | nucleus | 20.97 | 10.22 |
| CDX96070 | Canola | nucleus | 20.97 | 10.14 |
| CDX68803 | Canola | nucleus | 20.56 | 9.98 |
| CDY09718 | Canola | nucleus | 23.79 | 9.82 |
| CDX72337 | Canola | nucleus | 20.56 | 9.75 |
| CDX82389 | Canola | nucleus | 23.79 | 9.69 |
| CDY13465 | Canola | nucleus | 20.16 | 9.65 |
| CDX90546 | Canola | nucleus | 22.58 | 9.49 |
| CDY32725 | Canola | nucleus | 23.39 | 9.31 |
| CDY02793 | Canola | nucleus | 23.39 | 9.27 |
| CDY16482 | Canola | nucleus | 15.32 | 8.64 |
| CDX77263 | Canola | nucleus | 15.32 | 8.44 |
| CDY29358 | Canola | nucleus | 16.94 | 8.32 |
| CDY04335 | Canola | nucleus | 17.34 | 8.14 |
| CDX81041 | Canola | nucleus | 18.55 | 8.13 |
| CDX98997 | Canola | nucleus | 19.35 | 8.01 |
| CDX70016 | Canola | nucleus | 19.35 | 8.0 |
| CDX78284 | Canola | nucleus | 17.74 | 7.75 |
| CDY67763 | Canola | nucleus | 18.15 | 7.58 |
| CDY14053 | Canola | nucleus | 17.74 | 5.88 |
| CDY30695 | Canola | nucleus | 16.13 | 5.31 |
| CDY54630 | Canola | cytosol | 3.23 | 5.16 |
| CDX86925 | Canola | nucleus | 13.71 | 5.02 |
| CDY54632 | Canola | cytosol | 2.42 | 4.05 |
| CDX82391 | Canola | cytosol | 2.42 | 4.05 |
| CDX87845 | Canola | cytosol, extracellular | 1.61 | 2.99 |
| CDY49965 | Canola | mitochondrion | 4.03 | 2.97 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | GO:A0A078IWA7 | UniProt:A0A078IWA7 | EnsemblPlants:CDY53674 | ProteinID:CDY53674 |
| ProteinID:CDY53674.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00011219001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 |
| PANTHER:PTHR31442:SF1 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0002A1102A | SEG:seg |
Description
BnaC04g52240DBnaC04g52240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWA7]
Coordinates
chrLK033226:-:25954..26700
Molecular Weight (calculated)
27144.5 Da
IEP (calculated)
9.315
GRAVY (calculated)
-0.476
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MREETPNWLI RCEEELPSPE ELIPISQTLI TPHLALAFQI GSHNNIHSSP KRTAAMYHQK LQPAATPSPT MMNTDFGGDS STDLGSGGGG GGGDEPARTL
101: KRPRLVWTPQ LHKRFVDAVG HLGIKNAVPK TIMQLMSVEG LTRENVASHL QKYRLYLRRM QGGNGNGVSG GHVIVSDSAT DRLFASSPVP AHLLSHEYLM
201: PSPLMNPYLG KHVVTQQNHV VRNLRYEDSE YGNGDGGRKV LKLFPAGN
101: KRPRLVWTPQ LHKRFVDAVG HLGIKNAVPK TIMQLMSVEG LTRENVASHL QKYRLYLRRM QGGNGNGVSG GHVIVSDSAT DRLFASSPVP AHLLSHEYLM
201: PSPLMNPYLG KHVVTQQNHV VRNLRYEDSE YGNGDGGRKV LKLFPAGN
001: MREDNPNWFL RWEEELPSPE ELIPISQTLI TPHLALAFQI GSPNHHLGSK RTTAIYHQKL QSSTTPTTPT PTPPPMMMNS DFGGGDSTDL GSGSIGGEPA
101: RTLKRPRLVW TPQLHKRFVD AVGHLGIKNA VPKTIMQLMS VEGLTRENVA SHLQKYRLYL RRMQGGNGNG ITGGHVIVSD SATDRLFASS PVPAHFLSPD
201: YLMPPLEHSY MGKHVITQQN QVVRNLRYED SEYGHGSMKM LKLFPAGN
101: RTLKRPRLVW TPQLHKRFVD AVGHLGIKNA VPKTIMQLMS VEGLTRENVA SHLQKYRLYL RRMQGGNGNG ITGGHVIVSD SATDRLFASS PVPAHFLSPD
201: YLMPPLEHSY MGKHVITQQN QVVRNLRYED SEYGHGSMKM LKLFPAGN
Arabidopsis Description
MYBC1MYBC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VYV1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.