Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G25180.1 | CDX94215 | AT4G23750.1 | 21705390 |
| AT2G25180.1 | CDY03521 | AT4G23750.1 | 21705390 |
| AT2G25180.1 | CDY10965 | AT4G23750.1 | 21705390 |
| AT2G25180.1 | CDY47623 | AT4G23750.1 | 21705390 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35371 | Canola | nucleus | 97.92 | 97.25 |
| Bra032035.1-P | Field mustard | nucleus | 97.75 | 97.07 |
| AT2G25180.1 | Thale cress | nucleus | 85.96 | 83.22 |
| CDY13465 | Canola | nucleus | 58.75 | 65.44 |
| CDX72337 | Canola | nucleus | 58.93 | 65.01 |
| CDX68803 | Canola | nucleus | 54.77 | 61.84 |
| CDY52720 | Canola | nucleus | 19.76 | 60.96 |
| CDY54632 | Canola | cytosol | 14.38 | 56.08 |
| CDX87845 | Canola | cytosol, extracellular | 13.0 | 55.97 |
| CDX82391 | Canola | cytosol | 14.21 | 55.41 |
| CDY54630 | Canola | cytosol | 14.21 | 52.9 |
| CDX73905 | Canola | nucleus | 6.59 | 38.0 |
| CDY64566 | Canola | nucleus | 24.26 | 37.23 |
| CDY09419 | Canola | nucleus | 24.26 | 37.14 |
| Solyc07g005140.2.1 | Tomato | nucleus | 41.77 | 36.24 |
| Os02t0182100-01 | Rice | nucleus | 39.17 | 36.1 |
| Solyc12g010330.1.1 | Tomato | nucleus | 43.5 | 35.45 |
| CDY49965 | Canola | mitochondrion | 20.62 | 35.31 |
| PGSC0003DMT400020233 | Potato | nucleus | 42.98 | 35.08 |
| Zm00001d015521_P001 | Maize | nucleus | 38.3 | 35.02 |
| EES06387 | Sorghum | nucleus | 38.13 | 34.87 |
| TraesCS6B01G174400.1 | Wheat | nucleus | 37.44 | 34.73 |
| HORVU6Hr1G028680.1 | Barley | nucleus | 37.26 | 34.51 |
| GSMUA_Achr3P13400_001 | Banana | nucleus | 37.44 | 34.39 |
| CDX75892 | Canola | nucleus | 26.86 | 34.29 |
| TraesCS6A01G146200.3 | Wheat | nucleus | 37.09 | 33.44 |
| TraesCS6D01G135500.3 | Wheat | nucleus | 37.09 | 33.18 |
| CDY56439 | Canola | nucleus | 15.77 | 33.09 |
| CDX86245 | Canola | nucleus | 15.6 | 32.97 |
| CDX95898 | Canola | nucleus | 28.77 | 32.87 |
| CDX92102 | Canola | nucleus | 28.42 | 32.67 |
| CDY68249 | Canola | nucleus | 23.92 | 31.58 |
| CDX73907 | Canola | nucleus | 7.28 | 31.11 |
| PGSC0003DMT400008290 | Potato | nucleus | 41.59 | 31.05 |
| CDY28869 | Canola | nucleus | 27.21 | 30.97 |
| CDY02794 | Canola | nucleus | 25.48 | 30.82 |
| CDY07410 | Canola | nucleus | 27.04 | 30.65 |
| CDX96070 | Canola | nucleus | 27.21 | 30.6 |
| CDY01838 | Canola | nucleus | 26.0 | 30.0 |
| CDX90546 | Canola | nucleus | 29.98 | 29.32 |
| CDY09718 | Canola | nucleus | 29.81 | 28.62 |
| CDX82389 | Canola | nucleus | 29.98 | 28.41 |
| CDY32725 | Canola | nucleus | 28.08 | 26.0 |
| CDY02793 | Canola | nucleus | 28.08 | 25.88 |
| CDY08579 | Canola | nucleus | 10.75 | 25.62 |
| CDX80940 | Canola | nucleus | 10.57 | 25.0 |
| CDY33920 | Canola | nucleus | 18.54 | 24.71 |
| CDY00969 | Canola | nucleus | 12.13 | 24.65 |
| CDX98816 | Canola | nucleus | 11.09 | 24.52 |
| CDY52133 | Canola | nucleus | 10.57 | 24.4 |
| CDY53674 | Canola | nucleus | 10.23 | 23.79 |
| CDY05641 | Canola | nucleus | 18.2 | 23.54 |
| CDX79963 | Canola | nucleus | 10.05 | 23.48 |
| CDY61256 | Canola | nucleus | 11.09 | 23.36 |
| CDX99104 | Canola | nucleus | 11.44 | 22.76 |
| CDX76652 | Canola | nucleus | 16.46 | 22.67 |
| CDY11437 | Canola | nucleus | 16.46 | 22.62 |
| CDX68392 | Canola | nucleus | 10.23 | 22.52 |
| CDX82988 | Canola | nucleus | 9.88 | 22.01 |
| CDY16482 | Canola | nucleus | 16.64 | 21.82 |
| CDY36273 | Canola | mitochondrion | 9.01 | 21.76 |
| CDX77263 | Canola | nucleus | 16.81 | 21.56 |
| CDY34423 | Canola | nucleus | 16.46 | 20.0 |
| CDY29358 | Canola | nucleus | 17.5 | 20.0 |
| CDY32209 | Canola | nucleus | 16.12 | 19.7 |
| CDY04335 | Canola | nucleus | 18.02 | 19.7 |
| CDX70016 | Canola | nucleus | 19.76 | 19.0 |
| CDX98997 | Canola | nucleus | 19.24 | 18.53 |
| CDY67763 | Canola | nucleus | 18.2 | 17.68 |
| CDX81041 | Canola | nucleus | 17.33 | 17.67 |
| CDX78284 | Canola | nucleus | 16.98 | 17.25 |
| CDY14053 | Canola | nucleus | 17.5 | 13.5 |
| CDX86925 | Canola | nucleus | 14.21 | 12.11 |
| CDY30695 | Canola | nucleus | 13.52 | 10.36 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:11.4.2.4 | MapMan:15.5.23 | Gene3D:3.40.50.2300 | GO:A0A078JR86 | UniProt:A0A078JR86 |
| EnsemblPlants:CDY70103 | ProteinID:CDY70103 | ProteinID:CDY70103.1 | InterPro:CheY-like_superfamily | GO:GO:0000160 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00096513001 |
| InterPro:Homeobox-like_sf | InterPro:IPR001789 | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00072 |
| PFAM:PF00249 | PIRSF:PIRSF036392 | PFscan:PS50110 | PFscan:PS51294 | PANTHER:PTHR43874 | PANTHER:PTHR43874:SF7 |
| InterPro:Response_reg_B-typ_pln | InterPro:SANT/Myb | SMART:SM00448 | SUPFAM:SSF46689 | SUPFAM:SSF52172 | InterPro:Sig_transdc_resp-reg_receiver |
| TIGRFAMs:TIGR01557 | UniParc:UPI0004EBAF4B | SEG:seg | : | : | : |
Description
BnaC04g56320DTwo-component response regulator [Source:UniProtKB/TrEMBL;Acc:A0A078JR86]
Coordinates
chrLK041183:+:534..3393
Molecular Weight (calculated)
63468.8 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.571
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVERQDCVA LDQFPVGMRV LAVDDDQTCL RILESLLHRC QYHVTTTNQA QKALELLREN KNKFDLVISD VDMPDMDGFK LLELVGLEMD LPVIMLSAHS
101: DPKYVMKGVT HGACDYLLKP VRIEELKNIW QHVVRKNRGS NNGDKKDGSG NEGVANSDQN NGRANRKRKD QYNEDEDEER DDNDDPSSQK KPRVVWTVEL
201: HKKFVAAVNQ LGFEKAMPKK ILDLMNVEKL TRENVASHLQ KFRLYLKRIS GNQQAIMANS DLHFLQMSNG LDGFHHRPIP VGSGQFHGGA AAAGMRPFPP
301: NNGILGRLNT PSGIGGVRNL SSPPSSGMFL QNPTDLGKFH HVSSLPLNHI DGGNILQGLP IPLEFDQLQT NNNKSIIAGN SMAFPSFPTS LPNNNNHLVL
401: EGHPQASPSA FPGHQINKRL EHWSNAVSSS SSTLPPPGQN SNSLISHQFD ASSSNYSIPF CDSTIPLNPA LDHTNPRAFY RATDLDSNAN VQPGVYYDSL
501: QMRQSGNYGP TTDAMLSSNP KEGFTVGQQK LQSGFMGGEA GSLDDIVNST MKQEQSQGDL SEGDLGYGGF SSLRTCI
101: DPKYVMKGVT HGACDYLLKP VRIEELKNIW QHVVRKNRGS NNGDKKDGSG NEGVANSDQN NGRANRKRKD QYNEDEDEER DDNDDPSSQK KPRVVWTVEL
201: HKKFVAAVNQ LGFEKAMPKK ILDLMNVEKL TRENVASHLQ KFRLYLKRIS GNQQAIMANS DLHFLQMSNG LDGFHHRPIP VGSGQFHGGA AAAGMRPFPP
301: NNGILGRLNT PSGIGGVRNL SSPPSSGMFL QNPTDLGKFH HVSSLPLNHI DGGNILQGLP IPLEFDQLQT NNNKSIIAGN SMAFPSFPTS LPNNNNHLVL
401: EGHPQASPSA FPGHQINKRL EHWSNAVSSS SSTLPPPGQN SNSLISHQFD ASSSNYSIPF CDSTIPLNPA LDHTNPRAFY RATDLDSNAN VQPGVYYDSL
501: QMRQSGNYGP TTDAMLSSNP KEGFTVGQQK LQSGFMGGEA GSLDDIVNST MKQEQSQGDL SEGDLGYGGF SSLRTCI
001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI
Arabidopsis Description
ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.