Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019270.1-P | Field mustard | nucleus | 96.62 | 92.26 |
| CDX94215 | Canola | nucleus | 93.92 | 88.53 |
| CDY47623 | Canola | nucleus | 80.74 | 75.87 |
| CDY03521 | Canola | nucleus | 81.42 | 74.84 |
| AT4G23750.1 | Thale cress | nucleus | 78.72 | 67.93 |
| CDY05133 | Canola | nucleus | 50.0 | 53.43 |
| CDX90774 | Canola | nucleus | 50.0 | 53.43 |
| CDY12500 | Canola | nucleus | 25.0 | 47.74 |
| CDY41468 | Canola | nucleus | 25.34 | 47.47 |
| CDY70837 | Canola | nucleus | 23.31 | 46.94 |
| CDX91694 | Canola | nucleus | 25.34 | 46.58 |
| CDY49223 | Canola | nucleus | 25.34 | 45.45 |
| CDY09516 | Canola | nucleus | 25.0 | 45.12 |
| CDY66105 | Canola | nucleus | 25.34 | 44.91 |
| CDX68325 | Canola | nucleus | 25.0 | 44.85 |
| KRG92510 | Soybean | nucleus | 29.05 | 44.56 |
| KRH41287 | Soybean | nucleus | 40.88 | 41.3 |
| KRH27859 | Soybean | nucleus | 39.86 | 40.83 |
| KRH77624 | Soybean | nucleus | 39.86 | 39.6 |
| PGSC0003DMT400032058 | Potato | nucleus | 42.23 | 36.98 |
| Solyc08g081960.1.1 | Tomato | nucleus | 41.89 | 36.58 |
| KRH60010 | Soybean | nucleus | 40.54 | 35.93 |
| CDY11369 | Canola | nucleus | 32.43 | 33.92 |
| CDX80006 | Canola | nucleus | 30.41 | 33.46 |
| CDY42030 | Canola | nucleus | 30.41 | 32.97 |
| CDY61587 | Canola | nucleus | 40.2 | 32.87 |
| CDY47066 | Canola | nucleus | 37.84 | 32.75 |
| CDX71724 | Canola | nucleus | 31.76 | 32.64 |
| CDX96208 | Canola | nucleus | 37.84 | 32.09 |
| CDY49175 | Canola | nucleus | 37.84 | 31.91 |
| CDY54340 | Canola | nucleus | 36.15 | 31.75 |
| CDY52005 | Canola | nucleus | 30.74 | 31.71 |
| CDY53906 | Canola | nucleus | 30.41 | 31.69 |
| CDY29870 | Canola | nucleus | 34.12 | 31.08 |
| CDX92852 | Canola | nucleus | 33.78 | 30.86 |
| CDY71170 | Canola | nucleus | 35.14 | 30.86 |
| CDY71485 | Canola | nucleus | 34.12 | 29.97 |
| CDX95687 | Canola | nucleus | 25.68 | 29.92 |
| CDX97406 | Canola | nucleus | 32.43 | 29.27 |
| CDY14263 | Canola | nucleus | 32.09 | 28.96 |
| CDX84990 | Canola | nucleus | 21.62 | 25.81 |
| CDY42104 | Canola | nucleus | 14.86 | 24.58 |
| CDY04234 | Canola | nucleus | 24.32 | 22.71 |
| CDY44887 | Canola | nucleus | 23.99 | 22.47 |
| CDY65135 | Canola | nucleus | 23.65 | 22.36 |
| CDY38591 | Canola | nucleus | 22.64 | 22.26 |
| CDY07380 | Canola | nucleus | 23.65 | 22.22 |
| CDX96010 | Canola | nucleus | 22.64 | 22.04 |
| CDY40978 | Canola | nucleus | 18.24 | 21.34 |
| CDY13596 | Canola | nucleus | 22.64 | 21.14 |
| CDX83568 | Canola | nucleus | 22.3 | 21.09 |
| CDX99741 | Canola | nucleus | 19.93 | 18.73 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078F904 | UniProt:A0A078F904 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY10965 | ProteinID:CDY10965 | ProteinID:CDY10965.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00048902001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF42 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EE5F16 | SEG:seg | : | : | : | : |
Description
BnaA03g46240DBnaA03g46240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F904]
Coordinates
chrLK032008:+:365907..366839
Molecular Weight (calculated)
33021.5 Da
IEP (calculated)
5.466
GRAVY (calculated)
-0.557
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPEKNLVLP PNIKFTEHKT NTTRTVPGFN NHHLQQPRII RISVTDPDAT DSSSDDDEEE ETHQRFASKR RRIKKFVNEV VVLDSGAAST GSSTQIEPKK
101: RRRKRAKYRG VRQRPWGKWA AEIRDPLRRV RLWLGTFNTA EEAALVYDSA AIQLRGPDAL TNFSVPPPSP VKKKAKIKDD VASSSVSSDI LRSPVSVLRS
201: PFTVDETPAV IVKEEPSTTA SETFSDFSAP LFAEDDLFDF RSDFIAGDLF GEDLFGDTTC TGMNFGFDFG SGLSSWHVED HFQDIGDLFG SDPLAV
101: RRRKRAKYRG VRQRPWGKWA AEIRDPLRRV RLWLGTFNTA EEAALVYDSA AIQLRGPDAL TNFSVPPPSP VKKKAKIKDD VASSSVSSDI LRSPVSVLRS
201: PFTVDETPAV IVKEEPSTTA SETFSDFSAP LFAEDDLFDF RSDFIAGDLF GEDLFGDTTC TGMNFGFDFG SGLSSWHVED HFQDIGDLFG SDPLAV
001: MEAEKKMVLP RIKFTEHKTN TTTIVSELTN THQTRILRIS VTDPDATDSS SDDEEEEHQR FVSKRRRVKK FVNEVYLDSG AVVTGSCGQM ESKKRQKRAV
101: KSESTVSPVV SATTTTTGEK KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVT PTTATEKKAP PPSPVKKKKK
201: KNNKSKKSVT ASSSISRSSS NDCLCSPVSV LRSPFAVDEF SGISSSPVAA VVVKEEPSMT TVSETFSDFS APLFSDDDVF DFRSSVVPDY LGGDLFGEDL
301: FTADMCTDMN FGFDFGSGLS SWHMEDHFQD IGDLFGSDPL LAV
101: KSESTVSPVV SATTTTTGEK KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVT PTTATEKKAP PPSPVKKKKK
201: KNNKSKKSVT ASSSISRSSS NDCLCSPVSV LRSPFAVDEF SGISSSPVAA VVVKEEPSMT TVSETFSDFS APLFSDDDVF DFRSSVVPDY LGGDLFGEDL
301: FTADMCTDMN FGFDFGSGLS SWHMEDHFQD IGDLFGSDPL LAV
Arabidopsis Description
CRF2Ethylene-responsive transcription factor CRF2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUQ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.