Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010389.1-P | Field mustard | nucleus | 98.78 | 98.78 |
| CDX97406 | Canola | nucleus | 96.34 | 96.34 |
| CDX92852 | Canola | nucleus | 73.48 | 74.38 |
| CDY29870 | Canola | nucleus | 73.17 | 73.85 |
| CDY71485 | Canola | nucleus | 75.0 | 73.0 |
| CDY71170 | Canola | nucleus | 73.48 | 71.51 |
| AT4G27950.1 | Thale cress | nucleus | 71.34 | 69.85 |
| CDY54340 | Canola | nucleus | 48.17 | 46.88 |
| CDY47066 | Canola | nucleus | 48.78 | 46.78 |
| CDY49175 | Canola | nucleus | 48.78 | 45.58 |
| CDX96208 | Canola | nucleus | 48.48 | 45.56 |
| CDY61587 | Canola | nucleus | 50.0 | 45.3 |
| CDY70837 | Canola | nucleus | 19.51 | 43.54 |
| CDY09516 | Canola | nucleus | 21.04 | 42.07 |
| CDX68325 | Canola | nucleus | 21.04 | 41.82 |
| CDY49223 | Canola | nucleus | 21.04 | 41.82 |
| CDY66105 | Canola | nucleus | 21.04 | 41.32 |
| CDY12500 | Canola | nucleus | 19.51 | 41.29 |
| CDY41468 | Canola | nucleus | 19.51 | 40.51 |
| CDX91694 | Canola | nucleus | 19.51 | 39.75 |
| CDY11369 | Canola | nucleus | 32.62 | 37.81 |
| CDX71724 | Canola | nucleus | 31.71 | 36.11 |
| CDY53906 | Canola | nucleus | 29.27 | 33.8 |
| CDY52005 | Canola | nucleus | 29.57 | 33.8 |
| CDX80006 | Canola | nucleus | 26.83 | 32.71 |
| CDY10965 | Canola | nucleus | 28.96 | 32.09 |
| CDX95687 | Canola | nucleus | 24.7 | 31.89 |
| CDY42030 | Canola | nucleus | 26.22 | 31.5 |
| CDX94215 | Canola | nucleus | 29.27 | 30.57 |
| CDY47623 | Canola | nucleus | 28.96 | 30.16 |
| CDY03521 | Canola | nucleus | 29.57 | 30.12 |
| CDX90774 | Canola | nucleus | 23.17 | 27.44 |
| CDY05133 | Canola | nucleus | 22.56 | 26.71 |
| CDX84990 | Canola | nucleus | 17.38 | 22.98 |
| CDY44887 | Canola | nucleus | 20.73 | 21.52 |
| CDY65135 | Canola | nucleus | 20.43 | 21.41 |
| CDY42104 | Canola | nucleus | 11.59 | 21.23 |
| CDY07380 | Canola | nucleus | 19.51 | 20.32 |
| CDY04234 | Canola | nucleus | 19.51 | 20.19 |
| CDY38591 | Canola | nucleus | 18.29 | 19.93 |
| CDX96010 | Canola | nucleus | 17.99 | 19.41 |
| CDY13596 | Canola | nucleus | 17.99 | 18.61 |
| CDY40978 | Canola | nucleus | 14.33 | 18.58 |
| CDX83568 | Canola | nucleus | 17.38 | 18.21 |
| CDX99741 | Canola | nucleus | 16.16 | 16.83 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078FPK0 | UniProt:A0A078FPK0 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY14263 | ProteinID:CDY14263 | ProteinID:CDY14263.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00078845001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF40 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EE7DB0 | SEG:seg | : | : | : | : |
Description
BnaA08g13940DBnaA08g13940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPK0]
Coordinates
chrLK032041:+:503193..504179
Molecular Weight (calculated)
37338.9 Da
IEP (calculated)
4.549
GRAVY (calculated)
-0.591
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MIMDEYMELR PVKYTEHKTV IKKYTKKLPV ENKKKISTGR DSVRLVRVCV MDRDATDSSS DDEEFLFPRR RVKRLINEIR VQPSSSSGEV SAGKTLTVVD
101: PTLQKVPVSG AEQNPRKFRG VRRRPWGKYA AEIRDPEQRR RIWLGTFSTA EEAAMVYDNA AIRLRGPDAL TNFTLPTEPE PEPEPVRNIS VSLTSESMDD
201: SHHLLSPTSV LNYQISELTD EPIKPVKQEF PEREPISWSV GEDVSSNTDD SFPLDIPFLD KYFNESLPDI SIFDQSMSTI ESSDKDFFNG LMFFDDNIGG
301: ENYYPDIKEI GSVLNDLDES LISDLLAV
101: PTLQKVPVSG AEQNPRKFRG VRRRPWGKYA AEIRDPEQRR RIWLGTFSTA EEAAMVYDNA AIRLRGPDAL TNFTLPTEPE PEPEPVRNIS VSLTSESMDD
201: SHHLLSPTSV LNYQISELTD EPIKPVKQEF PEREPISWSV GEDVSSNTDD SFPLDIPFLD KYFNESLPDI SIFDQSMSTI ESSDKDFFNG LMFFDDNIGG
301: ENYYPDIKEI GSVLNDLDES LISDLLAV
001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
Arabidopsis Description
CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.