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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
  • plastid 1
PPI

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68325 Canola nucleus 97.58 97.58
CDY09516 Canola nucleus 83.64 84.15
CDY66105 Canola nucleus 84.85 83.83
AT1G71130.1 Thale cress nucleus 78.79 80.75
CDY70837 Canola nucleus 56.97 63.95
CDY12500 Canola nucleus 58.18 61.94
CDY41468 Canola nucleus 58.18 60.76
CDX91694 Canola nucleus 58.79 60.25
CDY10965 Canola nucleus 45.45 25.34
Zm00001d034605_P001 Maize nucleus 35.76 24.79
CDX94215 Canola nucleus 46.67 24.52
EER90653 Sorghum nucleus 35.15 24.17
Os03t0815800-01 Rice nucleus 35.15 24.07
CDY03521 Canola nucleus 46.67 23.91
CDY47623 Canola nucleus 44.85 23.49
CDX80006 Canola nucleus 38.18 23.42
CDY42030 Canola nucleus 38.18 23.08
CDY53906 Canola nucleus 39.39 22.89
CDY52005 Canola nucleus 39.39 22.65
CDY47066 Canola nucleus 45.45 21.93
CDY54340 Canola nucleus 44.24 21.66
CDY11369 Canola nucleus 36.97 21.55
CDX92852 Canola nucleus 41.82 21.3
CDY29870 Canola nucleus 41.82 21.23
CDX71724 Canola nucleus 36.97 21.18
CDX97406 Canola nucleus 41.82 21.04
CDY14263 Canola nucleus 41.82 21.04
CDX96208 Canola nucleus 44.24 20.92
CDX95687 Canola nucleus 32.12 20.87
CDY71485 Canola nucleus 42.42 20.77
CDX90774 Canola nucleus 34.55 20.58
CDY05133 Canola nucleus 34.55 20.58
CDY49175 Canola nucleus 43.64 20.51
CDY71170 Canola nucleus 41.82 20.47
CDY61587 Canola nucleus 44.24 20.17
CDX84990 Canola nucleus 29.09 19.35
Zm00001d019216_P001 Maize nucleus 27.27 17.24
CDY42104 Canola nucleus 17.58 16.2
TraesCS5D01G481700.1 Wheat nucleus 30.91 16.04
CDY40978 Canola nucleus 24.24 15.81
Zm00001d005203_P001 Maize nucleus 27.88 15.81
CDY07380 Canola nucleus 29.7 15.56
HORVU5Hr1G111550.1 Barley nucleus 31.52 15.48
CDY04234 Canola nucleus 29.7 15.46
CDY65135 Canola nucleus 29.09 15.34
CDY38591 Canola nucleus 27.88 15.28
CDY44887 Canola nucleus 29.09 15.19
CDX96010 Canola nucleus 27.88 15.13
CDY13596 Canola nucleus 28.48 14.83
TraesCS5B01G481300.1 Wheat nucleus 31.52 14.81
CDX83568 Canola nucleus 27.88 14.7
TraesCS5A01G468800.1 Wheat nucleus 31.52 14.36
CDX99741 Canola nucleus 26.06 13.65
KXG34718 Sorghum nucleus 27.88 13.37
Protein Annotations
MapMan:15.5.7.1Gene3D:3.30.730.10GO:A0A078IJG7UniProt:A0A078IJG7InterPro:AP2/ERF-transcript_factorInterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sfEnsemblPlants:CDY49223ProteinID:CDY49223ProteinID:CDY49223.1InterPro:DNA-bd_dom_sfGO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00092596001InterPro:IPR001471InterPro:IPR036955
PFAM:PF00847PIRSF:PIRSF038123PRINTS:PR00367PFscan:PS51032PANTHER:PTHR31194PANTHER:PTHR31194:SF43
SMART:SM00380SUPFAM:SSF54171UniParc:UPI0004EDE75ASEG:seg::
Description
BnaCnng17120DBnaCnng17120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJG7]
Coordinates
chrLK032818:-:87783..88280
Molecular Weight (calculated)
18407.9 Da
IEP (calculated)
10.556
GRAVY (calculated)
-0.645
Length
165 amino acids
Sequence
(BLAST)
001: MKRIVRISFT DAEATDSSSS EEEAEQLSEA SQARRRGKRL VKEIVIDSSD SDNRLDVCKT RFKIRIPPEF LKAATAEKKN KKKFRGVRQR PWGKWAAEIR
101: CGRALKGRRD RLWLGTFDTA EEAALAYDNA AVQLIGPHAP TNFSFPAENQ EVKMVAGASA VARGA
Best Arabidopsis Sequence Match ( AT1G71130.1 )
(BLAST)
001: MKRIIRISFT DAEATDSSSD EDTEERGGAS QTRRRGKRLV KEIVIDPSDS ADKLDVCKTR FKIRIPAEFL KTAKTEKKYR GVRQRPWGKW VAEIRCGRGA
101: CKGRRDRLWL GTFNTAEEAA LAYDNASIKL IGPHAPTNFG LPAENQEDKT VIGASEVARG A
Arabidopsis Description
ERF070Ethylene-responsive transcription factor ERF070 [Source:UniProtKB/Swiss-Prot;Acc:Q9C995]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.