CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90653
KXG34718

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22985.1	EER90653	AT1G22985.1	21705390
AT1G22985.1	KXG34718	AT1G22985.1	21705390
AT1G22985.1	EER90653	AT1G71130.1	21705390
AT1G22985.1	KXG34718	AT1G71130.1	21705390
AT1G71130.1	EER90653	AT1G22985.1	21705390
AT1G71130.1	KXG34718	AT1G22985.1	21705390
AT1G71130.1	EER90653	AT1G71130.1	21705390
AT1G71130.1	KXG34718	AT1G71130.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005203_P001	Maize	nucleus	72.67	85.91
Zm00001d019216_P001	Maize	nucleus	64.83	85.44
Os03t0815800-01	Rice	nucleus	31.69	45.23
EER90653	Sorghum	nucleus	30.23	43.33
HORVU5Hr1G111550.1	Barley	nucleus	35.76	36.61
TraesCS5D01G481700.1	Wheat	nucleus	33.43	36.16
TraesCS5A01G468800.1	Wheat	nucleus	37.21	35.36
TraesCS5B01G481300.1	Wheat	nucleus	36.05	35.33
CDY70837	Canola	nucleus	12.79	29.93
Bra012352.1-P	Field mustard	nucleus	12.5	29.25
CDY09516	Canola	nucleus	13.37	28.05
CDY49223	Canola	nucleus	13.37	27.88
CDX68325	Canola	nucleus	13.37	27.88
Bra003936.1-P	Field mustard	nucleus	13.37	27.88
CDY41468	Canola	nucleus	12.79	27.85
CDY66105	Canola	nucleus	13.37	27.54
Bra007963.1-P	Field mustard	nucleus	13.37	27.54
CDX91694	Canola	nucleus	12.79	27.33
Bra016367.1-P	Field mustard	nucleus	12.5	27.22
CDY12500	Canola	nucleus	12.21	27.1
AT1G22985.1	Thale cress	nucleus	12.5	27.04
OQU82736	Sorghum	nucleus	18.31	26.25
AT1G71130.1	Thale cress	nucleus	11.92	25.47
KXG33839	Sorghum	nucleus	20.35	23.1
EER89242	Sorghum	nucleus, plastid	17.44	17.96
EES03374	Sorghum	nucleus	16.57	17.43
KXG31528	Sorghum	nucleus	18.6	16.33
EER98690	Sorghum	nucleus	12.79	15.6
OQU89260	Sorghum	nucleus	9.88	11.81

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A0A1B6Q9V5	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlants:KXG34718	ProteinID:KXG34718	ProteinID:KXG34718.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF57	SMART:SM00380	EnsemblPlantsGene:SORBI_3002G081300	SUPFAM:SSF54171	UniParc:UPI00081AC5A7
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:8646870..8647943

Molecular Weight (calculated)

37765.1 Da

IEP (calculated)

9.967

GRAVY (calculated)

-0.938

Length

344 amino acids

Sequence
(BLAST)

001: MDPSLKEEVM KAVEEAKRSA AAAAAPTRCR VVRIIVHDED ATDSSSSSED EVDEEVEQEG EERPGSAGSV SVKRSRVLLQ SAGCGGEEEE EDEDEEGEGG
101: ARFTGVRRRP WGRWAAEIRD PLLRRRVWLG TFDTAEEAAA AYVAARLRIR GGPKASSSSD LLPPPAAAHR PREKQLPPPP PPLPQREKKQ LPPPPTQREK
201: QLPLPPPPLP QREKQQLPPP PPPLLPPKKQ LQYPPPPLLP PKKQQLYPPP LPLPPKKQQH HHHHHHHPPL PTLPPKKRLA PPPLLPESKR QCLASSPSEP
301: PRFVPLPVWA LMSGSGKRKK RSGCGGRVPA LHTPAPAAEE TGRA

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.