CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044004_P001	Maize	nucleus	82.57	90.3
Zm00001d011499_P001	Maize	nucleus	79.82	86.14
Os01t0657400-00	Rice	nucleus	68.81	77.05
TraesCS3A01G238300.1	Wheat	nucleus	68.5	75.93
TraesCS3D01G238600.1	Wheat	nucleus	66.36	74.06
TraesCS3B01G266800.1	Wheat	nucleus	66.06	73.72
HORVU3Hr1G059250.1	Barley	nucleus	65.44	72.54
GSMUA_Achr6P32030_001	Banana	nucleus	41.9	47.74
GSMUA_Achr9P05260_001	Banana	nucleus	41.9	46.92
KXG31528	Sorghum	nucleus	37.92	31.63
EER89242	Sorghum	nucleus, plastid	30.58	29.94
OQU82736	Sorghum	nucleus	21.41	29.17
EER90653	Sorghum	nucleus	18.96	25.83
KXG33839	Sorghum	nucleus	22.32	24.09
EER98690	Sorghum	nucleus	18.65	21.63
OQU89260	Sorghum	nucleus	16.82	19.1
KXG34718	Sorghum	nucleus	17.43	16.57

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:8058265	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5XFB4
InterPro:DNA-bd_dom_sf	EnsemblPlants:EES03374	ProteinID:EES03374	ProteinID:EES03374.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF37	SMART:SM00380	EnsemblPlantsGene:SORBI_3003G243500	SUPFAM:SSF54171
UniParc:UPI0001A85169	RefSeq:XP_002458254.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:58267060..58268393

Molecular Weight (calculated)

34028.1 Da

IEP (calculated)

4.279

GRAVY (calculated)

-0.333

Length

327 amino acids

Sequence
(BLAST)

001: MSRARTVRIF WDDPDLTDSS GEEDGCGARR VGRMVRELPP MAAPAAAAAA APAAAAVPDQ CNAGDGDRGR RVGVGVAGPV GVCSGARRRL GKGGGPGGAA
101: STKFRGVRRR PWGKFAAEIR DPWRGVRVWL GTFDTAEEAA RVYDTAAIQL RGPNATTNFS SAGSGAAGQL QDPATPGGYE SGAESSPAVS SPTSVLRKVP
201: SVSSLAEDSS KDFDSDVAAA PCEPAVTECR SLAVLEEEEL GEFVPFEDAP VYATSGFWDF EPDAGFLYAE PSSPELSWNA AAAAGAEPAS SDDAPSWAAP
301: ASPMQENNDY FQDLRDLFPL NPLPAIF

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.