Factsheet for TraesCS5D01G481700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G468800.1
TraesCS5B01G481300.1
TraesCS5D01G481700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22985.1	TraesCS5A01G468800.1	AT1G22985.1	21705390
AT1G22985.1	TraesCS5B01G481300.1	AT1G22985.1	21705390
AT1G22985.1	TraesCS5D01G481700.1	AT1G22985.1	21705390
AT1G22985.1	TraesCS5A01G468800.1	AT1G71130.1	21705390
AT1G22985.1	TraesCS5B01G481300.1	AT1G71130.1	21705390
AT1G22985.1	TraesCS5D01G481700.1	AT1G71130.1	21705390
AT1G71130.1	TraesCS5A01G468800.1	AT1G22985.1	21705390
AT1G71130.1	TraesCS5B01G481300.1	AT1G22985.1	21705390
AT1G71130.1	TraesCS5D01G481700.1	AT1G22985.1	21705390
AT1G71130.1	TraesCS5A01G468800.1	AT1G71130.1	21705390
AT1G71130.1	TraesCS5B01G481300.1	AT1G71130.1	21705390
AT1G71130.1	TraesCS5D01G481700.1	AT1G71130.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G481300.1	Wheat	nucleus	93.71	84.9
TraesCS5A01G468800.1	Wheat	nucleus	92.77	81.49
HORVU5Hr1G111550.1	Barley	nucleus	83.33	78.87
Os03t0815800-01	Rice	nucleus	41.2	54.36
EER90653	Sorghum	nucleus	40.57	53.75
Zm00001d034605_P001	Maize	nucleus	38.36	51.26
Zm00001d005203_P001	Maize	nucleus	35.85	39.18
Zm00001d019216_P001	Maize	nucleus	31.45	38.31
KXG34718	Sorghum	nucleus	36.16	33.43
CDY70837	Canola	nucleus	15.41	33.33
Bra012352.1-P	Field mustard	nucleus	15.41	33.33
CDY09516	Canola	nucleus	16.04	31.1
CDX68325	Canola	nucleus	16.04	30.91
CDY49223	Canola	nucleus	16.04	30.91
Bra003936.1-P	Field mustard	nucleus	16.04	30.91
CDY66105	Canola	nucleus	16.04	30.54
Bra007963.1-P	Field mustard	nucleus	16.04	30.54
CDY12500	Canola	nucleus	14.78	30.32
AT1G22985.1	Thale cress	nucleus	15.09	30.19
AT1G71130.1	Thale cress	nucleus	15.09	29.81
CDY41468	Canola	nucleus	14.78	29.75
CDX91694	Canola	nucleus	14.47	28.57
Bra016367.1-P	Field mustard	nucleus	14.15	28.48
TraesCS5D01G433100.1	Wheat	nucleus	23.58	25.6
TraesCS3D01G238600.1	Wheat	nucleus	19.5	21.16
TraesCS4D01G120200.1	Wheat	nucleus	17.61	18.36
TraesCS7D01G118000.1	Wheat	nucleus	18.24	17.9
TraesCS3D01G157100.1	Wheat	nucleus	18.24	16.67
TraesCS5D01G185300.1	Wheat	nucleus	14.78	15.16

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF82	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS5D01G481700	EnsemblPlants:TraesCS5D01G481700.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr5D:-:519435181..519436137

Molecular Weight (calculated)

33485.7 Da

IEP (calculated)

9.345

GRAVY (calculated)

-0.586

Length

318 amino acids

Sequence
(BLAST)

001: MESAAEAAAA AAAAEAQPRG RVVRIIVHDA DATDSSSSED ESAPPPPLAT MPTTKEERRR ERKKRRRVME AGRREDSGLP PPQASAGART PSVRYRGVRQ
101: RRWGKFASEI RDPIQGRRLW LGTFDTAEEA AAAYDAAKIR ISGSRRPPDG ATTGCFPFPF PPPEPAKPIT SPPPPPPPEP AKPAISPPPL PAKPFALPLK
201: LRLKLSFNAQ VKDKGWNWCS AGDVKEEEGG GCDGEAKVGD VSIAGEVKVE AGGCAGEVKV EAVGCADGSK EAGGSSEVQA VKPMWAMITG KRKKRSGCGT
301: RVGALHASSV CVEEVGGT

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.