Factsheet for TraesCS4D01G120200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G193100.1	Wheat	nucleus	94.75	93.53
TraesCS4B01G122100.1	Wheat	nucleus	94.43	87.27
HORVU4Hr1G023110.1	Barley	nucleus	85.25	67.71
HORVU6Hr1G048930.1	Barley	nucleus	38.03	61.05
Zm00001d052365_P001	Maize	nucleus	28.2	39.81
OQU82736	Sorghum	nucleus	29.84	37.92
TraesCS5D01G433100.1	Wheat	nucleus	30.49	31.74
GSMUA_Achr7P21980_001	Banana	nucleus	22.95	28.34
Solyc06g082590.1.1	Tomato	nucleus	22.62	27.82
GSMUA_Achr4P16600_001	Banana	nucleus	22.3	27.53
PGSC0003DMT400078294	Potato	nucleus	22.3	27.42
GSMUA_Achr5P27850_001	Banana	nucleus, plastid	22.3	25.19
TraesCS7D01G118000.1	Wheat	nucleus	26.56	25.0
VIT_06s0004g08190.t01	Wine grape	nucleus	21.31	22.81
TraesCS3D01G238600.1	Wheat	nucleus	21.64	22.53
TraesCS3D01G157100.1	Wheat	nucleus	25.25	22.13
KRH30664	Soybean	nucleus	19.34	21.69
GSMUA_Achr8P01690_001	Banana	nucleus	19.67	21.51
KRH72836	Soybean	nucleus	18.69	21.03
KRH17205	Soybean	nucleus	19.34	20.92
KRG98122	Soybean	nucleus	13.44	17.75
TraesCS5D01G481700.1	Wheat	nucleus	18.36	17.61
TraesCS5D01G185300.1	Wheat	nucleus	15.41	15.16

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF42	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4D01G120200	EnsemblPlants:TraesCS4D01G120200.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr4D:-:101389259..101390176

Molecular Weight (calculated)

31939.1 Da

IEP (calculated)

8.494

GRAVY (calculated)

-0.398

Length

305 amino acids

Sequence
(BLAST)

001: MDGCWRLPGG HGGGAAGRVV RVHFLDADAT DDSDEETNQP QRRGARRCVR EIGLPRAFSR LPSAAAGAVS SSSHWTRDKR LRAAAAGKKR TLVACGGDDW
101: SAGTWSARQL RGVRRRPWGK YAAEIRDPKL GRRVWLGTFN TAEEAKSVYD SAVLRLRGPS AVMKYTAPSP SPPLSTVTAS APSPSTSAAS PPSPSTTAAP
201: PPSPFGRAAS PPSPSTTATS APSPITTAAS PPSPSQSATT SWSLVNADEE VTAAFGLGLV DEETSLNNLM QFCLPAACSS RWDPSADFVE LADLDDLFAP
301: EPLAA

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.