Factsheet for HORVU6Hr1G048930.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G120200.1	Wheat	nucleus	61.05	38.03
TraesCS4A01G193100.1	Wheat	nucleus	61.58	37.86
HORVU4Hr1G023110.1	Barley	nucleus	75.26	37.24
TraesCS4B01G122100.1	Wheat	nucleus	62.63	36.06
Zm00001d052365_P001	Maize	nucleus	25.79	22.69
OQU82736	Sorghum	nucleus	24.74	19.58
GSMUA_Achr7P21980_001	Banana	nucleus	21.58	16.6
GSMUA_Achr4P16600_001	Banana	nucleus	20.53	15.79
Solyc06g082590.1.1	Tomato	nucleus	20.0	15.32
PGSC0003DMT400078294	Potato	nucleus	20.0	15.32
KRH30664	Soybean	nucleus	21.05	14.71
KRH72836	Soybean	nucleus	18.95	13.28
GSMUA_Achr5P27850_001	Banana	nucleus, plastid	18.42	12.96
KRH17205	Soybean	nucleus	18.95	12.77
VIT_06s0004g08190.t01	Wine grape	nucleus	18.42	12.28
HORVU3Hr1G059250.1	Barley	nucleus	18.95	12.2
HORVU5Hr1G111550.1	Barley	nucleus	21.58	12.2
HORVU3Hr1G030310.1	Barley	nucleus	21.05	11.33
GSMUA_Achr8P01690_001	Banana	nucleus	16.32	11.11
HORVU0Hr1G013910.2	Barley	cytosol, plastid	11.58	10.53
KRG98122	Soybean	nucleus	12.11	9.96
HORVU5Hr1G055190.2	Barley	nucleus	12.63	7.77

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.2	UniProt:A0A287U4J5	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:HORVU6Hr1G048930
EnsemblPlants:HORVU6Hr1G048930.1	InterPro:IPR001471	InterPro:IPR036955	PIRSF:PIRSF038123	PFscan:PS51032	PANTHER:PTHR31190
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000B481BED	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr6H:+:297611956..297612989

Molecular Weight (calculated)

19027.1 Da

IEP (calculated)

10.757

GRAVY (calculated)

-0.236

Length

190 amino acids

Sequence
(BLAST)

001: FRGGIRIRWR GSSIRDPKQG RRVWLGTFDT AEEAKSVYDS VVVRLRGPGA VSNAIARSPS PPLSTVTASV PSPSTSAGSP PLPSTTAVSP PSLFATAAFP
101: PAPSXTAASP TSPSTMAASP PSPSTTAASQ SAATTSWSLV NADEEVTAAC GSEQPDAVLP PRDVHQQVGP LGGLRGACGT AAAPPGSRRT

Best Arabidopsis Sequence Match ( AT5G53290.1 )
(BLAST)

001: MDEYIDFRPL KYTEHKTSMT KYTKKSSEKL SGGKSLKKVS ICYTDPDATD SSSDEDEEDF LFPRRRVKRF VNEITVEPSC NNVVTGVSMK DRKRLSSSSD
101: ETQSPASSRQ RPNNKVSVSG QIKKFRGVRQ RPWGKWAAEI RDPEQRRRIW LGTFETAEEA AVVYDNAAIR LRGPDALTNF SIPPQEEEEE EEPEPVIEEK
201: PVIMTTPTPT TSSSESTEED LQHLSSPTSV LNHRSEEIQQ VQQPFKSAKP EPGVSNAPWW HTGFNTGLGE SDDSFPLDTP FLDNYFNESP PEMSIFDQPM
301: DQIFCENDDI FNDMLFLGGE TMNIEDELTS SSIKDMGSTF SDFDDSLISD LLVA

Arabidopsis Description

CRF3Ethylene-responsive transcription factor CRF3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.