Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G426600.1 | Wheat | nucleus | 59.33 | 42.18 |
| TraesCS5D01G433100.1 | Wheat | nucleus | 57.89 | 41.3 |
| TraesCS5A01G424600.1 | Wheat | nucleus, plastid | 57.42 | 41.1 |
| KXG33839 | Sorghum | nucleus | 33.01 | 22.77 |
| Zm00001d042588_P001 | Maize | nucleus | 32.54 | 22.74 |
| Os05t0316800-01 | Rice | nucleus | 29.67 | 22.06 |
| HORVU6Hr1G048930.1 | Barley | nucleus | 10.53 | 11.58 |
| HORVU4Hr1G023110.1 | Barley | nucleus | 15.79 | 8.59 |
| Solyc06g082590.1.1 | Tomato | nucleus | 9.09 | 7.66 |
| PGSC0003DMT400078294 | Potato | nucleus | 8.61 | 7.26 |
| GSMUA_Achr5P27850_001 | Banana | nucleus, plastid | 9.09 | 7.04 |
| GSMUA_Achr8P01690_001 | Banana | nucleus | 9.09 | 6.81 |
| HORVU3Hr1G030310.1 | Barley | nucleus | 11.0 | 6.52 |
| GSMUA_Achr4P16600_001 | Banana | nucleus | 7.66 | 6.48 |
| VIT_06s0004g08190.t01 | Wine grape | nucleus | 8.61 | 6.32 |
| HORVU5Hr1G111550.1 | Barley | nucleus | 10.05 | 6.25 |
| GSMUA_Achr7P21980_001 | Banana | nucleus | 7.18 | 6.07 |
| HORVU3Hr1G059250.1 | Barley | nucleus | 7.66 | 5.42 |
| KRG98122 | Soybean | nucleus | 5.74 | 5.19 |
| KRH72836 | Soybean | nucleus | 6.7 | 5.17 |
| KRH30664 | Soybean | nucleus | 6.7 | 5.15 |
| KRH17205 | Soybean | nucleus | 5.74 | 4.26 |
| HORVU5Hr1G055190.2 | Barley | nucleus | 5.74 | 3.88 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G013910.2 | EnsemblPlantsGene:HORVU0Hr1G013910 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF36 | SEG:seg | UniParc:UPI000B466B3B |
| UniProt:A0A287E151 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:-:78082493..78083172
Molecular Weight (calculated)
18777.6 Da
IEP (calculated)
4.695
GRAVY (calculated)
-0.685
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: SRMNLGGTRG GGGPPPQQKQ KTPRRTGGRG SAXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXTSRR AAAPACPSPT PPTPRPPPQA KLRPTGESEA
101: AEAPATILPS APSEPEPEDN DADSFYPFAS PLNPVLRRAP SEAPRPVDHL YGELCDLTSA APPSKAAEFD WQQPWWESES KATEFDWQLP WWESEDFVMP
201: PAASAVSVV
101: AEAPATILPS APSEPEPEDN DADSFYPFAS PLNPVLRRAP SEAPRPVDHL YGELCDLTSA APPSKAAEFD WQQPWWESES KATEFDWQLP WWESEDFVMP
201: PAASAVSVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.