Factsheet for TraesCS5B01G426600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G424600.1	Wheat	nucleus, plastid	92.86	93.49
TraesCS5D01G433100.1	Wheat	nucleus	92.18	92.49
HORVU0Hr1G013910.2	Barley	cytosol, plastid	42.18	59.33
Os05t0316800-01	Rice	nucleus	54.42	56.94
KXG33839	Sorghum	nucleus	52.38	50.83
Zm00001d042588_P001	Maize	nucleus	50.34	49.5
GSMUA_Achr4P16600_001	Banana	nucleus	25.51	30.36
GSMUA_Achr5P27850_001	Banana	nucleus, plastid	27.21	29.63
GSMUA_Achr7P21980_001	Banana	nucleus	24.83	29.55
Solyc06g082590.1.1	Tomato	nucleus	24.49	29.03
PGSC0003DMT400078294	Potato	nucleus	24.15	28.63
TraesCS4B01G122100.1	Wheat	nucleus	31.97	28.48
VIT_06s0004g08190.t01	Wine grape	nucleus	25.85	26.67
KRH30664	Soybean	nucleus	23.81	25.74
TraesCS7B01G018400.1	Wheat	nucleus	27.89	25.47
GSMUA_Achr8P01690_001	Banana	nucleus	24.15	25.45
KRH72836	Soybean	nucleus	22.79	24.72
TraesCS3B01G266800.1	Wheat	nucleus	23.81	23.89
TraesCS3B01G176200.1	Wheat	nucleus	27.89	23.36
KRH17205	Soybean	nucleus	21.77	22.7
TraesCS5B01G481300.1	Wheat	nucleus	24.83	20.8
KRG98122	Soybean	nucleus	14.29	18.18
TraesCS5B01G178600.1	Wheat	nucleus	15.99	15.21

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.2	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF36	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS5B01G426600	EnsemblPlants:TraesCS5B01G426600.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr5B:-:602340597..602341481

Molecular Weight (calculated)

32012.1 Da

IEP (calculated)

6.569

GRAVY (calculated)

-0.628

Length

294 amino acids

Sequence
(BLAST)

001: MSPADSLAAG RTRRAGSLAP LPKRVCVFFV DADATESESS GDEEVRRGKR RVRKVIDISV KASSQPSPAS SIPRRRALLL RRRAAKAGDG GYRRRFRGVR
101: QRPWGKYAAE IRDPSLQKRL WLGTFDTAEE AAAVYDDAAV RLKGSHAVTN FSSSSSSDSD YVASNKPRSP PPAKLRPTGE AAAEATATVP PSAPSPPPEP
201: EPEDDDADSF NPFASSLTPV LRSAPGEAPR PVDHLYGELC DLASTAPPSK AVEFDWQQPW WESEPKATEF DWQLPWWESE DFVMPPAASA VSVI

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.