Factsheet for TraesCS4B01G122100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G193100.1	Wheat	nucleus	89.09	95.15
TraesCS4D01G120200.1	Wheat	nucleus	87.27	94.43
HORVU4Hr1G023110.1	Barley	nucleus	80.91	69.53
HORVU6Hr1G048930.1	Barley	nucleus	36.06	62.63
Zm00001d052365_P001	Maize	nucleus	26.67	40.74
OQU82736	Sorghum	nucleus	27.88	38.33
TraesCS5B01G426600.1	Wheat	nucleus	28.48	31.97
GSMUA_Achr7P21980_001	Banana	nucleus	21.52	28.74
GSMUA_Achr4P16600_001	Banana	nucleus	20.91	27.94
Solyc06g082590.1.1	Tomato	nucleus	20.61	27.42
PGSC0003DMT400078294	Potato	nucleus	20.3	27.02
GSMUA_Achr5P27850_001	Banana	nucleus, plastid	20.61	25.19
TraesCS7B01G018400.1	Wheat	nucleus	23.64	24.22
VIT_06s0004g08190.t01	Wine grape	nucleus	20.0	23.16
TraesCS3B01G266800.1	Wheat	nucleus	20.0	22.53
KRH30664	Soybean	nucleus	18.18	22.06
GSMUA_Achr8P01690_001	Banana	nucleus	18.48	21.86
KRH72836	Soybean	nucleus	17.88	21.77
TraesCS3B01G176200.1	Wheat	nucleus	23.03	21.65
KRH17205	Soybean	nucleus	18.18	21.28
TraesCS5B01G481300.1	Wheat	nucleus	19.7	18.52
KRG98122	Soybean	nucleus	12.73	18.18
TraesCS5B01G178600.1	Wheat	nucleus	14.24	15.21

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194
PANTHER:PTHR31194:SF14	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4B01G122100	EnsemblPlants:TraesCS4B01G122100.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:144787319..144788311

Molecular Weight (calculated)

34214.6 Da

IEP (calculated)

8.614

GRAVY (calculated)

-0.369

Length

330 amino acids

Sequence
(BLAST)

001: MDGCWRLPGG HGGAAAGRVV RVHFLDADAT DDSDEETSQP QRHCARRCVR QIGLPRAFSH LPSAAAGAVS SSSHWTREKR LRAAAAGKTR TLAACGGDDW
101: SAGARAARRL RGVRRRPWGK YAAEIRDPKL GRRVWLGTFN TAEEAKSVYD SAVLRLRGPS AVTKYTAPSP SPPISTVTAS APSPSTSAAS PPSPSTTAAP
201: PPSPFGRAAS PPSPSTMAAP PPSPFGRAAS PPSPSTTATS APSPITTAAS PPSPSTTAAS QSATTSWSLV NADEEVTAAF GLGFVDEETS LNNLMQFCLP
301: ATCSSRWDPS ADFVELADLD DLFAPEPLAA

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.