Factsheet for VIT_06s0004g08190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g082590.1.1	Tomato	nucleus	48.07	55.24
PGSC0003DMT400078294	Potato	nucleus	47.72	54.84
KRH72836	Soybean	nucleus	41.4	43.54
KRH17205	Soybean	nucleus	41.4	41.84
GSMUA_Achr7P21980_001	Banana	nucleus	35.44	40.89
KRH30664	Soybean	nucleus	38.6	40.44
GSMUA_Achr5P27850_001	Banana	nucleus, plastid	37.54	39.63
GSMUA_Achr4P16600_001	Banana	nucleus	32.98	38.06
KRG98122	Soybean	nucleus	27.72	34.2
GSMUA_Achr8P01690_001	Banana	nucleus	32.98	33.69
VIT_15s0046g01390.t01	Wine grape	nucleus	33.68	30.57
VIT_16s0050g02400.t01	Wine grape	nucleus	34.39	28.74
OQU82736	Sorghum	nucleus	23.86	28.33
Zm00001d052365_P001	Maize	nucleus	21.05	27.78
Os05t0316800-01	Rice	nucleus	27.02	27.4
TraesCS5A01G424600.1	Wheat	nucleus, plastid	26.67	26.03
TraesCS5B01G426600.1	Wheat	nucleus	26.67	25.85
TraesCS5D01G433100.1	Wheat	nucleus	26.32	25.6
KXG33839	Sorghum	nucleus	26.32	24.75
Zm00001d042588_P001	Maize	nucleus	25.96	24.75
VIT_01s0011g03470.t01	Wine grape	nucleus	24.91	22.19
TraesCS4A01G193100.1	Wheat	nucleus	23.51	21.68
TraesCS4D01G120200.1	Wheat	nucleus	22.81	21.31
TraesCS4B01G122100.1	Wheat	nucleus	23.16	20.0
HORVU4Hr1G023110.1	Barley	nucleus	24.91	18.49
HORVU6Hr1G048930.1	Barley	nucleus	12.28	18.42
HORVU0Hr1G013910.2	Barley	cytosol, plastid	6.32	8.61

Protein Annotations

EntrezGene:100246641	wikigene:100246641	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CCB43393	ProteinID:CCB43393.1	InterPro:DNA-bd_dom_sf	UniProt:F6GU77	EMBL:FN594951
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EntrezGene:LOC100246641	wikigene:LOC100246641	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF18	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00015C7FC1	ArrayExpress:VIT_06s0004g08190
EnsemblPlantsGene:VIT_06s0004g08190	EnsemblPlants:VIT_06s0004g08190.t01	unigene:Vvi.19280	RefSeq:XP_002265739	RefSeq:XP_002265739.1	SEG:seg

Description

No Description!

Coordinates

chr6:-:8968588..8970525

Molecular Weight (calculated)

31992.6 Da

IEP (calculated)

6.409

GRAVY (calculated)

-0.581

Length

285 amino acids

Sequence
(BLAST)

001: MLGCVRKSMG SDFVMPIRPA VKFSEHVVTT SKHMQELESV SASECLSGRR RVRHRVVRII HTDGDATDSS SDDEVELVQR VKRHVTEISL QPSVESPQKE
101: PTKKRVLRLP ESESTRRKKF RGVRQRPWGR WAAEIRDPTR RKRLWLGTYD TPEEAARVYD KAAVSLKGPN AVTNFPSVVK TESVATAGQS QSETCSLPSV
201: TASSPTSVLR YNEEAPFNGF GYCDVDAFGF DFDVPLTLPD IFSNKHLEED EFGEFDPDDF LVFETSLPLL HSNKSDEGEC RVGGL

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.