Factsheet for Zm00001d042588_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33839	Sorghum	nucleus	85.62	84.49
Os05t0316800-01	Rice	nucleus	54.52	58.01
TraesCS5D01G433100.1	Wheat	nucleus	49.5	50.51
TraesCS5B01G426600.1	Wheat	nucleus	49.5	50.34
TraesCS5A01G424600.1	Wheat	nucleus, plastid	48.16	49.32
Zm00001d052365_P001	Maize	nucleus	26.76	37.04
HORVU0Hr1G013910.2	Barley	cytosol, plastid	22.74	32.54
GSMUA_Achr4P16600_001	Banana	nucleus	26.42	31.98
GSMUA_Achr7P21980_001	Banana	nucleus	26.09	31.58
GSMUA_Achr5P27850_001	Banana	nucleus, plastid	26.76	29.63
Zm00001d034605_P001	Maize	nucleus	23.41	29.41
Solyc06g082590.1.1	Tomato	nucleus	23.75	28.63
PGSC0003DMT400078294	Potato	nucleus	23.41	28.23
KRH72836	Soybean	nucleus	24.08	26.57
GSMUA_Achr8P01690_001	Banana	nucleus	24.75	26.52
Zm00001d036251_P001	Maize	nucleus	27.42	26.03
VIT_06s0004g08190.t01	Wine grape	nucleus	24.75	25.96
KRH30664	Soybean	nucleus	23.08	25.37
KRH17205	Soybean	nucleus	23.41	24.82
Zm00001d044004_P001	Maize	nucleus	24.41	24.41
Zm00001d008968_P001	Maize	nucleus	26.42	24.31
Zm00001d039324_P001	Maize	nucleus	28.76	24.29
Zm00001d011499_P001	Maize	nucleus	24.08	23.76
Zm00001d005203_P001	Maize	nucleus	23.08	23.71
Zm00001d045262_P001	Maize	nucleus	24.75	23.49
Zm00001d019216_P001	Maize	nucleus	20.4	23.37
KRG98122	Soybean	nucleus	15.38	19.91
Zm00001d020043_P001	Maize	plastid	18.06	14.06

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A0A060D6V3	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EMBL:KJ727877	ProteinID:ONM35822.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190
PANTHER:PTHR31190:SF36	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00022194E7	EnsemblPlantsGene:Zm00001d042588	EnsemblPlants:Zm00001d042588_P001
EnsemblPlants:Zm00001d042588_T001	SEG:seg	:	:	:	:

Description

AP2-EREBP-transcription factor 52AP2 domain containing protein

Coordinates

chr3:+:172856158..172857057

Molecular Weight (calculated)

31731.4 Da

IEP (calculated)

7.579

GRAVY (calculated)

-0.280

Length

299 amino acids

Sequence
(BLAST)

001: MSAADSLTSG RGRRAEPPLP RLKRVRVYFV DADATDTDSS GNEDERGKRR VREVIHIDVE SASALTRSAQ PLVLPKKRPL PSQAAAAALV RRRSSGAGFR
101: RRFPGVRLRP WGKYAAEIRD PHQRKRLWLG TFDTAEEAAA AYDDAALRLK GSRHVVTGFP AEAPPPWPRL GLRPRREVPK EAAEGAAEED GEALASAPVP
201: AAAPASLDSQ AVDGTALVCP FSSPISVLRH AADEAPAAPA LPAFEFLYSG LGELGDLGSA TAPSKAVAAE FDCLPWWEGE DFVTVTGLTA SAGAAVSVI

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.