Factsheet for Zm00001d039324_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31528	Sorghum	nucleus	81.92	73.98
Zm00001d008968_P001	Maize	nucleus	61.58	67.08
TraesCS3A01G149000.1	Wheat	nucleus	61.86	62.39
TraesCS3B01G176200.1	Wheat	nucleus	61.3	61.82
TraesCS3D01G157100.1	Wheat	nucleus	60.45	61.49
HORVU3Hr1G030310.1	Barley	nucleus	60.73	60.91
Os01t0224100-01	Rice	nucleus	65.25	60.79
GSMUA_Achr2P19950_001	Banana	nucleus	36.44	47.25
GSMUA_Achr6P14240_001	Banana	nucleus	36.44	46.07
GSMUA_Achr10P...	Banana	nucleus	39.27	45.42
GSMUA_Achr8P19850_001	Banana	nucleus	41.81	44.31
Zm00001d044004_P001	Maize	nucleus	33.9	40.13
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	35.31	40.06
Zm00001d011499_P001	Maize	nucleus	33.9	39.6
Zm00001d036251_P001	Maize	nucleus	31.36	35.24
Zm00001d045262_P001	Maize	nucleus	30.51	34.29
Zm00001d052365_P001	Maize	nucleus	19.49	31.94
Zm00001d042588_P001	Maize	nucleus	24.29	28.76
Zm00001d034605_P001	Maize	nucleus	17.8	26.47
Zm00001d019216_P001	Maize	nucleus	15.54	21.07
Zm00001d005203_P001	Maize	nucleus	16.67	20.27
Zm00001d020043_P001	Maize	plastid	20.34	18.75

Protein Annotations

EntrezGene:103649554	MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A0A1D6MFB8	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	ProteinID:ONM28323.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194
PANTHER:PTHR31194:SF42	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002210E87	EnsemblPlantsGene:Zm00001d039324	EnsemblPlants:Zm00001d039324_P001
EnsemblPlants:Zm00001d039324_T001	SEG:seg	:	:	:	:

Description

AP2-EREBP-transcription factor 50Ethylene-responsive transcription factor CRF4

Coordinates

chr3:-:1876337..1877401

Molecular Weight (calculated)

38191.1 Da

IEP (calculated)

4.491

GRAVY (calculated)

-0.510

Length

354 amino acids

Sequence
(BLAST)

001: MWPMEEEMFL AVKRTEHVEV TSRAMDSAPA AGPRTVRVFC DDNDATDSSG DEAEGAAARR RVKRYVQEIR LQRAVPVKEE AASARAVAGE RPRPLALPGR
101: KRKSDGAGAG AEPRFRGVRR RPWGKYAAEI RDPWRRVRVW LGTFDTAEEA AKVYDSAAIQ LRGADATTNF EHAAVPVPVP DEVAGRLPQP PPAPASKNAS
201: SSATSSYDSG EESHAAAASP TSVLRTFPPS SAAADATCKK PAPAAETDES TGVGGSRSSV YAYPFFANDD CFGGDFPPLY TDFDLLADFP EPTLDFLADI
301: PEEKLPPLPE PFPAASPDEC PSDAEAASPA RWQQVDDFFQ DITDLFQIDP LPVV

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.