Factsheet for TraesCS3D01G157100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G149000.1	Wheat	nucleus	97.41	96.58
TraesCS3B01G176200.1	Wheat	nucleus	95.98	95.16
HORVU3Hr1G030310.1	Barley	nucleus	93.97	92.63
Zm00001d039324_P001	Maize	nucleus	61.49	60.45
Os01t0224100-01	Rice	nucleus	65.8	60.26
Zm00001d008968_P001	Maize	nucleus	55.75	59.69
KXG31528	Sorghum	nucleus	63.51	56.38
GSMUA_Achr2P19950_001	Banana	nucleus	34.2	43.59
GSMUA_Achr10P...	Banana	nucleus	37.64	42.81
GSMUA_Achr8P19850_001	Banana	nucleus	40.52	42.22
GSMUA_Achr6P14240_001	Banana	nucleus	33.62	41.79
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	35.06	39.1
TraesCS3D01G238600.1	Wheat	nucleus	31.03	36.86
TraesCS7D01G118000.1	Wheat	nucleus	32.18	34.57
TraesCS5D01G433100.1	Wheat	nucleus	23.28	27.65
TraesCS4D01G120200.1	Wheat	nucleus	22.13	25.25
TraesCS5D01G185300.1	Wheat	nucleus	16.95	19.03
TraesCS5D01G481700.1	Wheat	nucleus	16.67	18.24

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF42	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS3D01G157100	EnsemblPlants:TraesCS3D01G157100.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr3D:+:124865305..124867053

Molecular Weight (calculated)

37897.6 Da

IEP (calculated)

4.356

GRAVY (calculated)

-0.519

Length

348 amino acids

Sequence
(BLAST)

001: MEEEFFMAVK RTEHVEVTSR SVAASARGEE GVGGVEQPKM VRVFCDDFDA TDSSSDEEEG ERRRVKRYVQ EIRLQPAVQV KVEESAPVAK AASATATTRP
101: RVMVPVRKRK AEAGGERRFR GVRRRPWGKY AAEIRDPWRR VRVWLGTFDT AEEAAKVYDS AAIKLRGPDA TVNFQQSEDG EDMEVPAEVA ERLPQPPAGS
201: KNASSSATSY DSCEESHVAA ASPTSVLRSF PQSTLGAAVD DESSKKPSSS SSTAETDESS GVFGCSFSGD DFAGELAPLY TDFDLLSDFA EQPMDFLSNL
301: PEPAFAFSSD CSSSAYNPCP PSPAALQQAD AFFEDITDLF QIDPLPVI

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.