Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g082590.1.1 | Tomato | nucleus | 97.18 | 97.18 |
| VIT_06s0004g08190.t01 | Wine grape | nucleus | 54.84 | 47.72 |
| GSMUA_Achr7P21980_001 | Banana | nucleus | 42.34 | 42.51 |
| PGSC0003DMT400085012 | Potato | nucleus | 22.98 | 41.01 |
| KRH72836 | Soybean | nucleus | 44.35 | 40.59 |
| GSMUA_Achr5P27850_001 | Banana | nucleus, plastid | 41.94 | 38.52 |
| PGSC0003DMT400091285 | Potato | nucleus | 22.58 | 38.1 |
| KRH17205 | Soybean | nucleus | 42.74 | 37.59 |
| GSMUA_Achr4P16600_001 | Banana | nucleus | 37.1 | 37.25 |
| KRH30664 | Soybean | nucleus | 40.73 | 37.13 |
| PGSC0003DMT400089361 | Potato | nucleus | 16.94 | 33.87 |
| GSMUA_Achr8P01690_001 | Banana | nucleus | 37.9 | 33.69 |
| PGSC0003DMT400086990 | Potato | nucleus | 16.13 | 31.25 |
| KRG98122 | Soybean | nucleus | 28.23 | 30.3 |
| Zm00001d052365_P001 | Maize | nucleus | 25.4 | 29.17 |
| PGSC0003DMT400000274 | Potato | nucleus | 35.08 | 29.0 |
| PGSC0003DMT400032058 | Potato | nucleus | 38.71 | 28.4 |
| OQU82736 | Sorghum | nucleus | 27.02 | 27.92 |
| Os05t0316800-01 | Rice | nucleus | 29.03 | 25.62 |
| PGSC0003DMT400006041 | Potato | nucleus | 37.5 | 24.87 |
| TraesCS5B01G426600.1 | Wheat | nucleus | 28.63 | 24.15 |
| KXG33839 | Sorghum | nucleus | 29.44 | 24.09 |
| TraesCS5A01G424600.1 | Wheat | nucleus, plastid | 28.23 | 23.97 |
| TraesCS5D01G433100.1 | Wheat | nucleus | 28.23 | 23.89 |
| PGSC0003DMT400086922 | Potato | mitochondrion, nucleus | 37.1 | 23.65 |
| Zm00001d042588_P001 | Maize | nucleus | 28.23 | 23.41 |
| PGSC0003DMT400097578 | Potato | nucleus | 18.15 | 22.96 |
| TraesCS4D01G120200.1 | Wheat | nucleus | 27.42 | 22.3 |
| TraesCS4A01G193100.1 | Wheat | nucleus | 27.42 | 22.01 |
| TraesCS4B01G122100.1 | Wheat | nucleus | 27.02 | 20.3 |
| HORVU6Hr1G048930.1 | Barley | nucleus | 15.32 | 20.0 |
| PGSC0003DMT400037698 | Potato | nucleus | 25.81 | 18.6 |
| HORVU4Hr1G023110.1 | Barley | nucleus | 28.63 | 18.49 |
| PGSC0003DMT400058442 | Potato | nucleus | 23.79 | 17.15 |
| PGSC0003DMT400041053 | Potato | nucleus | 23.79 | 16.67 |
| PGSC0003DMT400014358 | Potato | nucleus | 22.18 | 14.14 |
| PGSC0003DMT400089378 | Potato | nucleus | 15.73 | 11.47 |
| HORVU0Hr1G013910.2 | Barley | cytosol, plastid | 7.26 | 8.61 |
Protein Annotations
| EntrezGene:102578223 | MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 |
| InterPro:IPR036955 | UniProt:M1CZU0 | PFAM:PF00847 | EnsemblPlantsGene:PGSC0003DMG400030472 | PGSC:PGSC0003DMG400030472 | EnsemblPlants:PGSC0003DMT400078294 |
| PIRSF:PIRSF038123 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF18 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI000295515D | RefSeq:XP_006350890.1 | SEG:seg | : | : |
Description
TSI1 [Source:PGSC_GENE;Acc:PGSC0003DMG400030472]
Coordinates
chr6:-:57680111..57681571
Molecular Weight (calculated)
27925.4 Da
IEP (calculated)
4.732
GRAVY (calculated)
-0.618
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MTENSVPLIK FTQHIVTTNK HVFSEHSEKS NSELQRVVRI ILTDADATDS SDDEGRNTVR RVKRHVTEIN LMPSPKSIGD RKRRSVSPDS DVTRRKKFRG
101: VRQRPWGRWA AEIRDPTRGK RVWLGTYDTP EEAAIVYDKA AVKLKGPDAV TNFPVSTTAE VTVTVTETET ESVADGGDKS ENDVALSPTS VLCNDDFAPF
201: DNLGFCEVDA FGFDVDSLFR LPDFAMTEKY YGEEFGEFDF DDFALEAR
101: VRQRPWGRWA AEIRDPTRGK RVWLGTYDTP EEAAIVYDKA AVKLKGPDAV TNFPVSTTAE VTVTVTETET ESVADGGDKS ENDVALSPTS VLCNDDFAPF
201: DNLGFCEVDA FGFDVDSLFR LPDFAMTEKY YGEEFGEFDF DDFALEAR
001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV
Arabidopsis Description
CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.