Factsheet for PGSC0003DMT400000274

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g095500.2.1	Tomato	nucleus	87.33	89.42
PGSC0003DMT400085012	Potato	nucleus	19.0	41.01
PGSC0003DMT400091285	Potato	nucleus	18.67	38.1
KRH07295	Soybean	nucleus	33.67	36.86
PGSC0003DMT400078294	Potato	nucleus	29.0	35.08
KRH66264	Soybean	nucleus	33.0	34.98
PGSC0003DMT400089361	Potato	nucleus	14.33	34.68
PGSC0003DMT400086990	Potato	nucleus	14.33	33.59
KRG97126	Soybean	nucleus	29.33	30.03
PGSC0003DMT400097578	Potato	nucleus	19.33	29.59
KRH68876	Soybean	nucleus	29.67	29.57
PGSC0003DMT400032058	Potato	nucleus	32.67	28.99
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	35.0	26.99
PGSC0003DMT400006041	Potato	nucleus	33.0	26.47
PGSC0003DMT400037698	Potato	nucleus	23.0	20.06
PGSC0003DMT400058442	Potato	nucleus	22.0	19.19
PGSC0003DMT400041053	Potato	nucleus	21.0	17.8
PGSC0003DMT400014358	Potato	nucleus	21.0	16.2
PGSC0003DMT400089378	Potato	nucleus	14.33	12.65

Protein Annotations

EntrezGene:102598554	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M0ZGF4	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400000091	PGSC:PGSC0003DMG400000091	EnsemblPlants:PGSC0003DMT400000274	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294BCA5
RefSeq:XP_006339673.1	SEG:seg	:	:	:	:

Description

AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400000091]

Coordinates

chr1:+:73088356..73089618

Molecular Weight (calculated)

34426.4 Da

IEP (calculated)

4.893

GRAVY (calculated)

-0.820

Length

300 amino acids

Sequence
(BLAST)

001: METKTSQKIK VHKTITTKYD QNRLTPRVVR ICYTDCDATD SSSDDDDDER NRVKKYVTEI KFEKRVAAID VRKSLNSKKK KKVIDLKRDE NVKKFRGVRQ
101: RPWGKWSAEI RDPVKKTRVW LGTFETAEEA ARKYNIAAIQ LRGADAIINF IDTPLEKEKE NIITSVSDYD STGECENLCS PTSVLRQNNN DNNNNNDDAA
201: PAPAPDAKIT NQEMNDESKK MEIDQNGFMF DDNLPLMDQS FLKDFFDFRS PSPLMDDVLL PGFSDGMGLL PEVLSIHGNR MLDEDLETCK WANDFFQDVC

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.