Factsheet for PGSC0003DMT400037698

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g009450.1.1	Tomato	nucleus	91.28	92.08
PGSC0003DMT400041053	Potato	nucleus	52.33	50.85
VIT_01s0011g03470.t01	Wine grape	nucleus	41.28	44.38
Bra036360.1-P	Field mustard	nucleus	29.07	35.59
CDY40978	Canola	nucleus	25.87	35.18
CDX84990	Canola	nucleus	25.29	35.08
KRH43430	Soybean	nucleus	34.3	34.91
KRH35957	Soybean	nucleus	35.76	34.65
CDY42104	Canola	nucleus	18.02	34.64
KRH45262	Soybean	nucleus	36.63	34.62
KRG90812	Soybean	nucleus	35.76	33.42
KRH75373	Soybean	nucleus, plastid	35.76	33.15
AT1G68550.2	Thale cress	nucleus	31.1	33.02
CDY13596	Canola	nucleus	30.23	32.81
Bra025170.1-P	Field mustard	nucleus	30.23	32.7
CDX83568	Canola	nucleus	29.65	32.59
CDX96010	Canola	nucleus	27.91	31.58
Bra004318.1-P	Field mustard	nucleus	27.91	31.58
CDY38591	Canola	nucleus	27.62	31.56
AT3G25890.2	Thale cress	nucleus	29.94	31.02
PGSC0003DMT400085012	Potato	nucleus	12.5	30.94
PGSC0003DMT400091285	Potato	nucleus	13.08	30.61
CDY04234	Canola	nucleus	28.2	30.6
CDY65135	Canola	nucleus	27.62	30.35
KRH04558	Soybean	nucleus	32.56	30.19
CDX99741	Canola	nucleus	27.62	30.16
Bra033923.1-P	Field mustard	nucleus	27.62	30.06
CDY44887	Canola	nucleus	27.62	30.06
Bra004033.1-P	Field mustard	nucleus	27.62	29.97
PGSC0003DMT400089361	Potato	nucleus	10.76	29.84
CDY07380	Canola	nucleus	27.03	29.52
PGSC0003DMT400086990	Potato	nucleus	10.47	28.12
AT1G25470.1	Thale cress	nucleus	23.26	27.87
GSMUA_Achr9P19330_001	Banana	mitochondrion	20.06	27.82
PGSC0003DMT400078294	Potato	nucleus	18.6	25.81
Bra024743.1-P	Field mustard	plastid	25.0	25.75
GSMUA_Achr4P06840_001	Banana	nucleus	18.9	25.59
GSMUA_Achr4P13800_001	Banana	nucleus	18.9	23.9
GSMUA_Achr1P23090_001	Banana	nucleus	19.48	23.02
PGSC0003DMT400000274	Potato	nucleus	20.06	23.0
PGSC0003DMT400032058	Potato	nucleus	21.8	22.19
EER98690	Sorghum	nucleus	18.02	21.99
Os09t0309700-01	Rice	nucleus	19.77	21.38
HORVU5Hr1G055190.2	Barley	nucleus	18.02	20.06
PGSC0003DMT400014358	Potato	nucleus	22.38	19.79
TraesCS5B01G178600.1	Wheat	nucleus	17.73	19.74
PGSC0003DMT400006041	Potato	nucleus	21.22	19.52
TraesCS5A01G180800.1	Wheat	nucleus	17.44	19.35
TraesCS5D01G185300.1	Wheat	nucleus	17.15	19.03
PGSC0003DMT400097578	Potato	nucleus	10.76	18.88
OQU89260	Sorghum	nucleus	15.7	18.75
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	19.77	17.48
Zm00001d020043_P001	Maize	plastid	18.6	16.67
PGSC0003DMT400058442	Potato	nucleus	14.83	14.83
GSMUA_Achr10P...	Banana	vacuole	22.97	13.39
PGSC0003DMT400089378	Potato	nucleus	9.01	9.12

Protein Annotations

EntrezGene:102603135	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1B5Q5	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400014541	PGSC:PGSC0003DMG400014541	EnsemblPlants:PGSC0003DMT400037698	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF61	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295D5DB
RefSeq:XP_006344128.1	SEG:seg	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014541]

Coordinates

chr5:+:2748773..2750911

Molecular Weight (calculated)

38365.3 Da

IEP (calculated)

4.433

GRAVY (calculated)

-0.737

Length

344 amino acids

Sequence
(BLAST)

001: MKMFESQRQF QKSKVREESA RPMRKIRIVC DDPEATDSSD DEGVDVSKPK RFVREIYLPV VSSFTLKKIP ETESSCQDSN NGDKKSRGGV LAKTPKTPSC
101: PRPSSSKYRG VRQRKWGKWA AEIRDPFKSR RVWLGTYSTA EEASHAYEMK RLEFEAMAKS NSNTDVSEKS SNNESNNKNR RKVNNVGCVS EDDSAQSLVS
201: HTSHTSPASV FEMDSLTSGS AAVSEVNNND KLVEQLLDDD KLGLMEDSLS LADIGARMDF DTEMDMFFAG NDNFCQSLDD FAVNDFEDLP ICGLDGQLPD
301: DLPDYDFDFD FDGYNDACAW MDDAATAPLM NGTTTTPLNI ALCP

Best Arabidopsis Sequence Match ( AT1G68550.1 )
(BLAST)

001: MVAIRKEQSL SGVSSEIKKR AKRNTLSSLP QETQPLRKVR IIVNDPYATD DSSSDEEELK VPKPRKMKRI VREINFPSME VSEQPSESSS QDSTKTDGKI
101: AVSASPAVPR KKPVGVRQRK WGKWAAEIRD PIKKTRTWLG TFDTLEEAAK AYDAKKLEFD AIVAGNVSTT KRDVSSSETS QCSRSSPVVP VEQDDTSASA
201: LTCVNNPDDV STVAPTAPTP NVPAGGNKET LFDFDFTNLQ IPDFGFLAEE QQDLDFDCFL ADDQFDDFGL LDDIQGFEDN GPSALPDFDF ADVEDLQLAD
301: SSFGFLDQLA PINISCPLKS FAAS

Arabidopsis Description

ERF118Ethylene-responsive transcription factor ERF118 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.