Factsheet for PGSC0003DMT400041053

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g007180.1.1	Tomato	nucleus	90.11	95.22
PGSC0003DMT400037698	Potato	nucleus	50.85	52.33
VIT_01s0011g03470.t01	Wine grape	nucleus	36.16	40.0
CDY42104	Canola	nucleus	17.23	34.08
KRH45262	Soybean	nucleus	35.03	34.07
CDX84990	Canola	nucleus	23.45	33.47
KRH75373	Soybean	nucleus, plastid	34.75	33.15
KRH43430	Soybean	nucleus	31.36	32.84
KRH35957	Soybean	nucleus	32.49	32.39
KRG90812	Soybean	nucleus	33.62	32.34
PGSC0003DMT400085012	Potato	nucleus	12.15	30.94
PGSC0003DMT400091285	Potato	nucleus	12.71	30.61
Bra036360.1-P	Field mustard	nucleus	24.29	30.61
AT1G68550.2	Thale cress	nucleus	27.97	30.56
CDY38591	Canola	nucleus	25.42	29.9
PGSC0003DMT400089361	Potato	nucleus	10.45	29.84
CDY40978	Canola	nucleus	21.19	29.64
GSMUA_Achr9P19330_001	Banana	mitochondrion	20.62	29.44
Bra004318.1-P	Field mustard	nucleus	24.86	28.95
CDX96010	Canola	nucleus	24.86	28.95
Bra025170.1-P	Field mustard	nucleus	25.99	28.93
CDX83568	Canola	nucleus	25.42	28.75
CDY13596	Canola	nucleus	25.71	28.71
Bra004033.1-P	Field mustard	nucleus	25.42	28.39
AT3G25890.2	Thale cress	nucleus	26.55	28.31
CDY07380	Canola	nucleus	25.14	28.25
PGSC0003DMT400086990	Potato	nucleus	10.17	28.12
CDY04234	Canola	nucleus	25.14	28.08
CDY65135	Canola	nucleus	24.58	27.8
GSMUA_Achr4P06840_001	Banana	nucleus	19.77	27.56
Bra033923.1-P	Field mustard	nucleus	24.29	27.22
KRH04558	Soybean	nucleus	28.25	26.95
CDY44887	Canola	nucleus	24.01	26.9
AT1G25470.1	Thale cress	nucleus	21.75	26.83
CDX99741	Canola	nucleus	22.88	25.71
Bra024743.1-P	Field mustard	plastid	23.73	25.15
GSMUA_Achr4P13800_001	Banana	nucleus	19.21	25.0
GSMUA_Achr1P23090_001	Banana	nucleus	20.06	24.4
PGSC0003DMT400078294	Potato	nucleus	16.67	23.79
PGSC0003DMT400032058	Potato	nucleus	20.9	21.89
PGSC0003DMT400000274	Potato	nucleus	17.8	21.0
PGSC0003DMT400014358	Potato	nucleus	22.03	20.05
EER98690	Sorghum	nucleus	15.82	19.86
Os09t0309700-01	Rice	nucleus	17.8	19.81
PGSC0003DMT400097578	Potato	nucleus	10.73	19.39
TraesCS5B01G178600.1	Wheat	nucleus	16.38	18.77
TraesCS5A01G180800.1	Wheat	nucleus	16.1	18.39
TraesCS5D01G185300.1	Wheat	nucleus	16.1	18.39
HORVU5Hr1G055190.2	Barley	nucleus	15.82	18.12
OQU89260	Sorghum	nucleus	14.69	18.06
PGSC0003DMT400006041	Potato	nucleus	17.8	16.84
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	18.36	16.71
Zm00001d020043_P001	Maize	plastid	16.95	15.62
PGSC0003DMT400058442	Potato	nucleus	13.56	13.95
GSMUA_Achr10P...	Banana	vacuole	22.6	13.56
PGSC0003DMT400089378	Potato	nucleus	8.19	8.53

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M1BAU3
PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400015880	PGSC:PGSC0003DMG400015880	EnsemblPlants:PGSC0003DMT400041053	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF61	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000296BFDD	SEG:seg

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015880]

Coordinates

chr4:-:1162235..1164746

Molecular Weight (calculated)

39574.0 Da

IEP (calculated)

4.493

GRAVY (calculated)

-0.637

Length

354 amino acids

Sequence
(BLAST)

001: MLKPLSSKFE NLGRNMKNKV DTNRLVRKIR IVCNDPDATD DSSDDERIDD SRCKRFVREI KLQIGNSFNL TKASEIECSF QDSNNGEKKT KKEGLVKPLI
101: QPRPAGGLLS KYKGVRQRKW GKWAAEIRDP FKGRRVWLGT YNTAVEASRA YELKRLEFET RAKNSSTNVS RESSGSMVSE YQNHGQNVAS GVSEDYAESS
201: VSRTSHSLSS SSVLELDTLT SVSASAPILR LNGLNDNEKA SNVAPLEAYV VEQEVPELPI LEETLPLSQI GESMDLDLEL ESFLIGADDF NQHLDEFVVN
301: DFEDPPVCLI EGDEQLPTGL PDFDDFNFDG YNESFSWMDD APRTNGTPLN IACP

Best Arabidopsis Sequence Match ( AT3G25890.2 )
(BLAST)

001: MAERKKRSSI QTNKPNKKPM KKKPFQLNHL PGLSEDLKTM RKLRFVVNDP YATDYSSSEE EERSQRRKRY VCEIDLPFAQ AATQAESESS YCQESNNNGV
101: SKTKISACSK KVLRSKASPV VGRSSTTVSK PVGVRQRKWG KWAAEIRHPI TKVRTWLGTY ETLEQAADAY ATKKLEFDAL AAATSAASSV LSNESGSMIS
201: ASGSSIDLDK KLVDSTLDQQ AGESKKASFD FDFADLQIPE MGCFIDDSFI PNACELDFLL TEENNNQMLD DYCGIDDLDI IGLECDGPSE LPDYDFSDVE
301: IDLGLIGTTI DKYAFVDHIA TTTPTPLNIA CP

Arabidopsis Description

ERF119Ethylene-responsive transcription factor ERF119 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.