Factsheet for GSMUA_Achr1P23090_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P19330_001	Banana	mitochondrion	57.39	67.34
GSMUA_Achr4P06840_001	Banana	nucleus	37.11	42.52
GSMUA_Achr4P13800_001	Banana	nucleus	38.49	41.18
KRH39204	Soybean	nucleus	15.12	26.04
KRH41626	Soybean	nucleus	14.43	25.45
CDX84990	Canola	nucleus	20.62	24.19
KRH48474	Soybean	nucleus	24.74	23.0
CDY65135	Canola	nucleus	24.05	22.36
CDY42104	Canola	nucleus	13.75	22.35
VIT_01s0011g03470.t01	Wine grape	nucleus	24.4	22.19
Bra033923.1-P	Field mustard	nucleus	24.05	22.15
CDY44887	Canola	nucleus	24.05	22.15
GSMUA_Achr4P16600_001	Banana	nucleus	18.56	21.86
GSMUA_Achr5P27850_001	Banana	nucleus, plastid	20.27	21.85
GSMUA_Achr2P19950_001	Banana	nucleus	20.27	21.61
AT1G68550.2	Thale cress	nucleus	24.05	21.6
GSMUA_Achr8P01690_001	Banana	nucleus	20.62	21.51
CDX96010	Canola	nucleus	22.34	21.38
AT1G25470.1	Thale cress	nucleus	20.96	21.25
KRG90812	Soybean	nucleus	26.8	21.2
KRH35957	Soybean	nucleus	25.77	21.13
Bra004318.1-P	Field mustard	nucleus	21.99	21.05
KRH43430	Soybean	nucleus	24.4	21.01
CDY07380	Canola	nucleus	22.68	20.95
GSMUA_Achr10P...	Banana	nucleus	21.99	20.91
GSMUA_Achr10P...	Banana	nucleus	20.62	20.91
CDY04234	Canola	nucleus	22.68	20.82
Bra004033.1-P	Field mustard	nucleus	22.68	20.82
GSMUA_Achr6P14240_001	Banana	nucleus	19.93	20.71
GSMUA_Achr7P21980_001	Banana	nucleus	17.53	20.65
CDY38591	Canola	nucleus	21.31	20.6
GSMUA_Achr6P32030_001	Banana	nucleus	20.27	20.56
Solyc05g009450.1.1	Tomato	nucleus	23.71	20.23
EER98690	Sorghum	nucleus	19.59	20.21
GSMUA_Achr7P14200_001	Banana	nucleus	19.93	20.21
GSMUA_Achr10P...	Banana	nucleus	20.27	20.14
PGSC0003DMT400041053	Potato	nucleus	24.4	20.06
OQU89260	Sorghum	nucleus	19.59	19.79
KRH45262	Soybean	nucleus	24.74	19.78
GSMUA_Achr7P10720_001	Banana	nucleus	20.27	19.73
Solyc04g007180.1.1	Tomato	nucleus	22.68	19.7
GSMUA_Achr9P28840_001	Banana	nucleus	19.93	19.66
Bra036360.1-P	Field mustard	nucleus	18.9	19.57
GSMUA_Achr9P05260_001	Banana	nucleus	19.59	19.52
PGSC0003DMT400037698	Potato	nucleus	23.02	19.48
KRH75373	Soybean	nucleus, plastid	24.74	19.41
CDY40978	Canola	nucleus	16.84	19.37
Os09t0309700-01	Rice	nucleus	20.96	19.18
CDX83568	Canola	nucleus	20.62	19.17
GSMUA_Achr8P19850_001	Banana	nucleus	21.99	19.16
CDY13596	Canola	nucleus	20.62	18.93
Bra025170.1-P	Field mustard	nucleus	20.62	18.87
KRH04558	Soybean	nucleus	23.71	18.6
HORVU5Hr1G055190.2	Barley	nucleus	19.59	18.45
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	19.59	18.27
TraesCS5B01G178600.1	Wheat	nucleus	19.24	18.12
TraesCS5D01G185300.1	Wheat	nucleus	19.24	18.06
TraesCS5A01G180800.1	Wheat	nucleus	19.24	18.06
Bra024743.1-P	Field mustard	plastid	20.27	17.66
Zm00001d020043_P001	Maize	plastid	22.34	16.93
AT3G25890.2	Thale cress	nucleus	19.24	16.87
CDX99741	Canola	nucleus	17.87	16.51
PGSC0003DMT400014358	Potato	nucleus	21.99	16.45
Solyc03g119580.1.1	Tomato	nucleus	21.65	16.36
GSMUA_Achr10P...	Banana	vacuole	29.21	14.41

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G23090_001	EnsemblPlants:GSMUA_Achr1P23090_001
EnsemblPlants:GSMUA_Achr1T23090_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0S2B7	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002965C31
SEG:seg	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G23090_001]

Coordinates

chr1:-:17345451..17350273

Molecular Weight (calculated)

32124.2 Da

IEP (calculated)

6.172

GRAVY (calculated)

-0.343

Length

291 amino acids

Sequence
(BLAST)

001: MKKLDCLGSI RDLKPPMMMK RRSSGKLDGS KAVGSSPVKR IRVFFTDPDA TDSDDGDEAL IDKSKRVVCE IHVDPIGKTL KTLADPERKK KEAVTRLAAP
101: SPAAAGRYKG VRQRRWGKWA AEIRDPIRGA RLWLGTFATA EEAAAAYRAA ASRLEEEKRC LRRPAPAPAP ASAAEDSASS WASAPSSSSL LAPPAAQEAE
201: EEERSIAELF AEVPAEVDFV GLDGDAPFFV GEVGDDFGLD DLLLWDQPLD DHSRWLFWLR FCFCYPSLRM INIVLLSLIS LFLTEHNHRN T

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.