Factsheet for GSMUA_Achr4P06840_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P13800_001	Banana	nucleus	66.54	62.13
GSMUA_Achr9P19330_001	Banana	mitochondrion	45.67	46.77
GSMUA_Achr1P23090_001	Banana	nucleus	42.52	37.11
KRH41626	Soybean	nucleus	18.9	29.09
KRH39204	Soybean	nucleus	16.93	25.44
GSMUA_Achr4P16600_001	Banana	nucleus	23.62	24.29
KRH48474	Soybean	nucleus	29.92	24.28
VIT_01s0011g03470.t01	Wine grape	nucleus	29.92	23.75
GSMUA_Achr7P21980_001	Banana	nucleus	22.83	23.48
CDX84990	Canola	nucleus	22.83	23.39
GSMUA_Achr10P...	Banana	nucleus	26.38	23.34
EER98690	Sorghum	nucleus	25.59	23.05
GSMUA_Achr6P32030_001	Banana	nucleus	25.98	23.0
GSMUA_Achr9P05260_001	Banana	nucleus	26.38	22.95
GSMUA_Achr6P14240_001	Banana	nucleus	25.2	22.86
GSMUA_Achr2P19950_001	Banana	nucleus	24.41	22.71
CDY07380	Canola	nucleus	27.95	22.54
CDY04234	Canola	nucleus	27.95	22.4
Bra004033.1-P	Field mustard	nucleus	27.95	22.4
GSMUA_Achr5P27850_001	Banana	nucleus, plastid	23.62	22.22
GSMUA_Achr9P28840_001	Banana	nucleus	25.59	22.03
AT1G68550.2	Thale cress	nucleus	27.95	21.91
OQU89260	Sorghum	nucleus	24.8	21.88
CDY44887	Canola	nucleus	27.17	21.84
Bra033923.1-P	Field mustard	nucleus	27.17	21.84
CDY65135	Canola	nucleus	26.77	21.73
AT1G25470.1	Thale cress	nucleus	24.02	21.25
GSMUA_Achr10P...	Banana	nucleus	25.59	21.24
KRG90812	Soybean	nucleus	30.71	21.2
GSMUA_Achr10P...	Banana	nucleus	24.41	21.16
GSMUA_Achr7P14200_001	Banana	nucleus	23.62	20.91
KRH35957	Soybean	nucleus	29.13	20.85
GSMUA_Achr8P01690_001	Banana	nucleus	22.83	20.79
KRH43430	Soybean	nucleus	27.56	20.71
Bra036360.1-P	Field mustard	nucleus	22.44	20.28
GSMUA_Achr8P19850_001	Banana	nucleus	26.38	20.06
Solyc04g007180.1.1	Tomato	nucleus	26.38	20.0
CDY13596	Canola	nucleus	24.8	19.87
PGSC0003DMT400041053	Potato	nucleus	27.56	19.77
AT3G25890.2	Thale cress	nucleus	25.59	19.58
CDY42104	Canola	nucleus	13.78	19.55
Bra025170.1-P	Field mustard	nucleus	24.41	19.5
CDX83568	Canola	nucleus	24.02	19.49
CDX96010	Canola	nucleus	23.23	19.41
Bra004318.1-P	Field mustard	nucleus	23.23	19.41
GSMUA_Achr7P10720_001	Banana	nucleus	22.83	19.4
CDY38591	Canola	nucleus	22.83	19.27
Solyc05g009450.1.1	Tomato	nucleus	25.59	19.06
PGSC0003DMT400037698	Potato	nucleus	25.59	18.9
KRH75373	Soybean	nucleus, plastid	27.56	18.87
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	22.83	18.59
TraesCS5B01G178600.1	Wheat	nucleus	22.44	18.45
KRH45262	Soybean	nucleus	26.38	18.41
TraesCS5A01G180800.1	Wheat	nucleus	22.44	18.39
TraesCS5D01G185300.1	Wheat	nucleus	22.44	18.39
KRH04558	Soybean	nucleus	26.77	18.33
Bra024743.1-P	Field mustard	plastid	24.02	18.26
Os09t0309700-01	Rice	nucleus	22.83	18.24
CDY40978	Canola	nucleus	18.11	18.18
HORVU5Hr1G055190.2	Barley	nucleus	22.05	18.12
Zm00001d020043_P001	Maize	plastid	26.38	17.45
Solyc03g119580.1.1	Tomato	nucleus	25.98	17.14
CDX99741	Canola	nucleus	21.26	17.14
PGSC0003DMT400014358	Potato	nucleus	25.98	16.97
GSMUA_Achr10P...	Banana	vacuole	33.46	14.41

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G06840_001	EnsemblPlants:GSMUA_Achr4P06840_001
EnsemblPlants:GSMUA_Achr4T06840_001	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0SLQ1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000296524F
SEG:seg	:	:	:	:	:

Description

Putative Ethylene-responsive transcription factor CRF4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G06840_001]

Coordinates

chr4:+:5128011..5128987

Molecular Weight (calculated)

27810.6 Da

IEP (calculated)

7.149

GRAVY (calculated)

-0.602

Length

254 amino acids

Sequence
(BLAST)

001: MKKSQGLSSF RPNSRKHLNG LIGSGKAARK VRIFFADPDA TDTSCSEDEE DKFGTESKRR KRVLYEIPLS PAAKTLEIQR VSQHRAPKSL TSSTSAASGR
101: YKGVRQRRWG KWAAEIRDPI RGVRLWLGTY ATAEAAAEVY RAAARRIEEE KRSLLHHRHG PSNDSAGSVS SSCMSAPAGV PPSPSSVLDI SLAAKPKGRP
201: AAELLEELSM PEMEFGLDEE PFLVGELGED AIGLDDLPLS EHQFDGDDFS FLDS

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.