Factsheet for Bra004033.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
golgi 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07380	Canola	nucleus	97.16	97.78
CDY04234	Canola	nucleus	94.32	94.32
Bra004318.1-P	Field mustard	nucleus	62.78	65.46
Bra033923.1-P	Field mustard	nucleus	61.2	61.39
AT1G68550.2	Thale cress	nucleus	61.83	60.49
Bra036360.1-P	Field mustard	nucleus	34.7	39.15
Bra025170.1-P	Field mustard	nucleus	37.54	37.42
Bra024743.1-P	Field mustard	plastid	36.59	34.73
VIT_01s0011g03470.t01	Wine grape	nucleus	34.07	33.75
KRH35957	Soybean	nucleus	36.59	32.68
KRH43430	Soybean	nucleus	34.7	32.54
Bra012352.1-P	Field mustard	nucleus	14.51	31.29
KRG90812	Soybean	nucleus	36.28	31.25
Bra003936.1-P	Field mustard	nucleus	15.46	29.7
Bra007963.1-P	Field mustard	nucleus	15.46	29.34
Bra016367.1-P	Field mustard	nucleus	14.2	28.48
KRH45262	Soybean	nucleus	32.49	28.3
GSMUA_Achr9P19330_001	Banana	mitochondrion	22.08	28.23
GSMUA_Achr4P06840_001	Banana	nucleus	22.4	27.95
Solyc05g009450.1.1	Tomato	nucleus	29.97	27.86
KRH04558	Soybean	nucleus	32.49	27.76
PGSC0003DMT400037698	Potato	nucleus	29.97	27.62
GSMUA_Achr4P13800_001	Banana	nucleus	23.66	27.57
KRH75373	Soybean	nucleus, plastid	31.86	27.22
Solyc04g007180.1.1	Tomato	nucleus	27.76	26.27
PGSC0003DMT400041053	Potato	nucleus	28.39	25.42
Bra003462.1-P	Field mustard	nucleus	21.77	24.38
EER98690	Sorghum	nucleus	21.45	24.11
HORVU5Hr1G055190.2	Barley	nucleus	22.71	23.3
Bra019270.1-P	Field mustard	nucleus	22.71	23.23
Bra000736.1-P	Field mustard	nucleus	19.56	22.71
GSMUA_Achr1P23090_001	Banana	nucleus	20.82	22.68
Bra004548.1-P	Field mustard	nucleus	19.24	22.68
TraesCS5B01G178600.1	Wheat	nucleus	22.08	22.65
TraesCS5A01G180800.1	Wheat	nucleus	22.08	22.58
TraesCS5D01G185300.1	Wheat	nucleus	22.08	22.58
OQU89260	Sorghum	nucleus	20.5	22.57
Bra013730.1-P	Field mustard	nucleus	22.08	22.22
Os09t0309700-01	Rice	nucleus	21.77	21.7
Bra029079.1-P	Field mustard	nucleus	21.77	20.12
Bra040839.1-P	Field mustard	nucleus	20.5	20.0
Bra010389.1-P	Field mustard	nucleus	20.19	19.51
Bra003068.1-P	Field mustard	nucleus	22.4	19.51
Bra026295.1-P	Field mustard	nucleus	20.5	19.29
Zm00001d020043_P001	Maize	plastid	22.4	18.49
Bra022643.1-P	Field mustard	nucleus	20.5	18.47
GSMUA_Achr10P...	Banana	vacuole	23.34	12.54

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra004033	EnsemblPlants:Bra004033.1
EnsemblPlants:Bra004033.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CIJ9	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF21	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00025419F5	SEG:seg

Description

AT1G68550 (E=4e-070) | AP2 domain-containing transcription factor, putative

Coordinates

chrA07:+:16421662..16422615

Molecular Weight (calculated)

35237.1 Da

IEP (calculated)

4.578

GRAVY (calculated)

-0.581

Length

317 amino acids

Sequence
(BLAST)

001: MVEISKQQSL VDMKKPKRSN SLLSLSSHPQ DTHQPLRKVR IIVNDPYATD DSSSDEEEVV KQPRQVKRIV REVNFPPLEP PRVEPSVSSS QDSTKTTSKK
101: VVSASASASP ALRPKKRVGV RQRKWGKWAA EIRHPITKIR TWLGTFDTEE AAYQAYIEKR REYDALVGIT NDSVSETSQC SRSSPLEQDT SASALTCVKP
201: KEEVEVKIPT TDVDSGKEVL FDFNFADLPI PDFGFFEEPM GPAGVNEEDL DFDCFFTDDQ LDDFGLLDDI NGFGDCGPSA LPDFDFADLG LELPGSGFLG
301: DQNVPQHITC TRKSFAT

Best Arabidopsis Sequence Match ( AT1G68550.1 )
(BLAST)

001: MVAIRKEQSL SGVSSEIKKR AKRNTLSSLP QETQPLRKVR IIVNDPYATD DSSSDEEELK VPKPRKMKRI VREINFPSME VSEQPSESSS QDSTKTDGKI
101: AVSASPAVPR KKPVGVRQRK WGKWAAEIRD PIKKTRTWLG TFDTLEEAAK AYDAKKLEFD AIVAGNVSTT KRDVSSSETS QCSRSSPVVP VEQDDTSASA
201: LTCVNNPDDV STVAPTAPTP NVPAGGNKET LFDFDFTNLQ IPDFGFLAEE QQDLDFDCFL ADDQFDDFGL LDDIQGFEDN GPSALPDFDF ADVEDLQLAD
301: SSFGFLDQLA PINISCPLKS FAAS

Arabidopsis Description

ERF118Ethylene-responsive transcription factor ERF118 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.